Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2016 ATGGCTTTCAAACCCCGCACTGTTGAAGAGATCTTCAAGGACTATAGCGCTCGAAGAATCGCTATCACTCGCGCTCTCACTCACGACGTTGATATACTCTACGGGCTCTGTGATCCAGGTAAGGATAATTTGTGTCTTTATGGACATCCAAATAAGACTTGGGAAGTAACTCTACCATCAGAGGAAGTTCCACCAGCACTCCCTGAGCCAGCTCTTGGAATCAATTTCGCTAGGGATGACGTGAGTCGTACGGACTGGCTTTCTTTAGTTGCTGTGCATAGTGATTCGTGGTTGATTTCAGTGGCTTTTTACCTTGGAACTGGTCTTAACCACAATGAAAGGAAGCGTTTATTTGGGCTGATCAACGCTCTTCCCACCGTTTTTCAAGTAGTGACAGACAATAAACCAATTAAAAACAAGCCCTCCATGGATAGTGGAAGCAAAGCTTTGGGAAACACTGAGGTAGTTACAGTTGAACATATTCAATTAGTTTGTGGATGTTGTGGTGGAAATTACAACAGAGATGAATTTTGGATAGGCTGCGATATTTGTGAATGGTGGTACCATGGGAAATGTGCTATGATCACCCCTAGAAAAGCTGAGACCCTAACACATTACAAATGTGCAACATGCAGCTCAAGGAGGGGAACATGCGGGATGAGGCCATTTATGAGCATGCGACTCTTGATTGATGTGGATCTTCTTATAGATCCCAATTGGGTTATGGACATGGCTTCCAGTCCCCGCACCGTTGAAGAGATCTTCAAGGATTACAGCGCCAGAAGAACCGCTGTTATTCGTGCCCTCACTCACGACGTTGATGAATTTTACGGCCTCTGTGATCCAGATAAGGATAACCTGTGCCTCTATGGACATCCAAATGAGGCCTGGGAAGTAACTCTGCCAGCGGAGGAAGTTCCGCCTGAGCTCCCTGAGCCGGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGTAGGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCGTGGTTGGTTTCTGTGGCCTTTTATCTTGGAGCTCGCCTTAACCGCAATGAAAGGAAACGATTATTTAGCTTGATCAATGATCTTCCATCTGTTTTTGAAGTTGTGACTGATAGGAAACCAATTAAAGACAAGCCAACTGCGGATAGTGGAAGCAAATCTAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGTAGAAGAGGGTTTTGAGGAGGATGAAGATGAGCATAATGAAACACTTTGTGGAAGCTGCGGCGGAAATTACAATGCCGATGAGTTTTGGATTTGCTGTGACATATGTGAGAGGTGGTTCCATGGGAAGTGTGTTAAGATTACCCCTGCAAAGGCTGAGAGCATAAAACAATATAAATGTCCATCATGCAGCATGAGGCGGGGCAGGCCCTAG 1422 0.4543 MAFKPRTVEEIFKDYSARRIAITRALTHDVDILYGLCDPGKDNLCLYGHPNKTWEVTLPSEEVPPALPEPALGINFARDDVSRTDWLSLVAVHSDSWLISVAFYLGTGLNHNERKRLFGLINALPTVFQVVTDNKPIKNKPSMDSGSKALGNTEVVTVEHIQLVCGCCGGNYNRDEFWIGCDICEWWYHGKCAMITPRKAETLTHYKCATCSSRRGTCGMRPFMSMRLLIDVDLLIDPNWVMDMASSPRTVEEIFKDYSARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTDRKPIKDKPTADSGSKSSDGQVKSNPKFVEEGFEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2016 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 467 IPR013083 -
Aed9g2016 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 213 IPR013083 -
Aed9g2016 473 PANTHER CPG BINDING PROTEIN 159 215 IPR045104 GO:0006355|GO:0042393
Aed9g2016 473 Pfam PHD-finger 165 213 IPR019787 -
Aed9g2016 473 Pfam PHD-finger 420 467 IPR019787 -
Aed9g2016 473 PANTHER CPG BINDING PROTEIN 4 154 IPR045104 GO:0006355|GO:0042393
Aed9g2016 473 PANTHER CPG BINDING PROTEIN 243 472 IPR045104 GO:0006355|GO:0042393
Aed9g2016 473 ProSitePatterns Zinc finger PHD-type signature. 165 211 IPR019786 -
Aed9g2016 473 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 243 472 - -
Aed9g2016 473 ProSiteProfiles Zinc finger PHD-type profile. 162 214 IPR019787 -
Aed9g2016 473 CDD PHD_AL_plant 165 214 IPR044104 -
Aed9g2016 473 SUPERFAMILY FYVE/PHD zinc finger 408 471 IPR011011 -
Aed9g2016 473 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 4 154 - -
Aed9g2016 473 MobiDBLite consensus disorder prediction 380 400 - -
Aed9g2016 473 SMART PHD_3 419 467 IPR001965 -
Aed9g2016 473 SMART PHD_3 164 212 IPR001965 -
Aed9g2016 473 ProSiteProfiles Zinc finger PHD-type profile. 417 469 IPR019787 -
Aed9g2016 473 SUPERFAMILY FYVE/PHD zinc finger 162 217 IPR011011 -
Aed9g2016 473 ProSitePatterns Zinc finger PHD-type signature. 420 466 IPR019786 -
Aed9g2016 473 CDD PHD_AL_plant 419 469 IPR044104 -
Aed9g2016 473 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 159 215 - -
Aed9g2016 473 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Aed9g2016 473 Pfam Alfin 250 375 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2016 Aed-Chr9 23429950 23438020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2016 245 472 Alfin-like Transcription Factor Family AT5G05610 74.576 9.25e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aed9g2016 Alfin 5.9e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2016 - - gmx:100782478 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2016 9 23429950 23438020 Aed2g1134 2 9383603 9386939 PCT