Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2014 ATGGAGGAGCAGCTCCACTCCACCGCCGCCGTGATTCCTCCTCTGTTCGCCGTGCCGTCCGTGGAAACTCCGCCCGCCGGATCCCAGACGCCGGTCCCGTCCGGAAGAGGCGGCTGGAGCATCCGCGACGGCTCGGCCGCCATTGTTAGGGACGACACCTGCTCTTGCTTCGCCGTCGTCTTCAGCCTTTGGTTCTTCGTGTCGATGACTATGATACTGGGAGTTTATGGGTCCATGACCATCGTGCTGGGTCCAATATCTTCGATTGTTTTCCAACCTAGTTCCGTCTTCGTACAATCTGTGAAGGTAGAAAACTTAAAGGCAAACCCTGGCCCAGGACCCATTCTTTATGGTACATATCAGTATCCTCCACTTGATTTTGTTACTACTTGGGGAGAAACTCGTAATGTGTCTCTTCCCTATGGCTCATACAAGGCAAGTATACATGCATGCGAATGGAAATATTATCTGAATAGCGGCTCTTCAATAAATATTTCGTATCACGTGAGCTCTAGGAGCTCTTCTGTTTACCTTATAATTGCAGAAGGGGACTTGAGCCTCACTCGGTGGCTGGAGGATCCAACCGAACCTAATACAACTCTGTCATGGAATGTGATCCATGGAACTGGTATGATTACACAGCACATATTCTGGTCAACAAGCTATTATGTGGCATTGGGTAATTTGGATGAGGATGTAGAGAATGCATCCAATGAGTGGTATGTCAAAGTGTCCTATGGACCAAGATGGGTGACCTATATTGTTGGCATAGGTGGATTGACTTTGCTTGTGTTTTGGGGCTTCAACTTCTTGAACAAGCTTCAGTGTGCTCATGAAGATAGAGCAGGAGTTAGATCTGAGGGAACAGAACCTCAGAGAAACCCTTTGCTTTCCCACAAAGATGACGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTGCCACAAGAAGAGGAGGATCTTGAATTTCTTCCGGGAGGTTCTGTTGATGGGAAGCTTTTAGGTGATGGTGAAACCAGCAATAATACACGGCGTCTATGTGCTATTTGCTTTGATGCTCAAAGGGACTGCTTCTTTCTTCCATGTGGACACTGTGTTGCTTGTTTTGCATGTGGAACTAGGATAGCCGAGGCAGCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAGGTTAGGAAGATTTTCACTGTTTGA 1197 0.4737 MEEQLHSTAAVIPPLFAVPSVETPPAGSQTPVPSGRGGWSIRDGSAAIVRDDTCSCFAVVFSLWFFVSMTMILGVYGSMTIVLGPISSIVFQPSSVFVQSVKVENLKANPGPGPILYGTYQYPPLDFVTTWGETRNVSLPYGSYKASIHACEWKYYLNSGSSINISYHVSSRSSSVYLIIAEGDLSLTRWLEDPTEPNTTLSWNVIHGTGMITQHIFWSTSYYVALGNLDEDVENASNEWYVKVSYGPRWVTYIVGIGGLTLLVFWGFNFLNKLQCAHEDRAGVRSEGTEPQRNPLLSHKDDDLSSWGSSYDSLPQEEEDLEFLPGGSVDGKLLGDGETSNNTRRLCAICFDAQRDCFFLPCGHCVACFACGTRIAEAAGTCPVCRRNMKKVRKIFTV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2014 398 MobiDBLite consensus disorder prediction 283 310 - -
Aed9g2014 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 398 IPR013083 -
Aed9g2014 398 PANTHER OS05G0521000 PROTEIN 235 398 IPR044586 GO:0004842
Aed9g2014 398 Pfam Zinc finger, C3HC4 type (RING finger) 344 392 - -
Aed9g2014 398 Pfam Domain of unknown function (DUF4792) 113 186 IPR032008 -
Aed9g2014 398 SMART ring_2 347 385 IPR001841 -
Aed9g2014 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 235 398 - -
Aed9g2014 398 SUPERFAMILY RING/U-box 346 392 - -
Aed9g2014 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 36 234 - -
Aed9g2014 398 Pfam Domain of unknown function (DUF4793) 217 265 IPR032010 -
Aed9g2014 398 ProSiteProfiles Zinc finger RING-type profile. 347 386 IPR001841 -
Aed9g2014 398 PANTHER OS05G0521000 PROTEIN 36 234 IPR044586 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2014 Aed-Chr9 23416199 23421214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2014 320 395 C3H Transcription Factor Family AT3G06140 28.947 3.65e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2014 - - gmx:100791057 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2014 9 23416199 23421214 Aed9g2014 9 23416199 23421214 ECH