Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2006 ATGGCTTCTCATCAGCAGCAACATGTGCACGTACAACAGCCATGGCTATTGGAGAACGGGAACCTGAAGGTGCTTACGAAGGAGTCTCGGCATGGCCGCACTGCACACAGCATGTCCTCAAACTCCTTGCGCAAGAAGTCTAGCCGCACCCTTGTCTCAAAGGTTCCATGTGCCACTATCAGAAACGTGCTTTCGAACTTGCAGGAGGTTATTCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCAGCTGCTATCTTTGCCGACTGCTATGGCCTTGCAAGACCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAACAAGTTGCCTTTTACACTGGTCCCACAGTTGGAGGACTTCTGAATGCAACATGTGGGAATGTTACTGAGCTCATAATAGCAATATTTGCCCTTAGCACTAACAAAATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGGACCTCTCTATTATGTGGTGGAATCGCAAACCTTAAATTGGAACAAAAATATGATAGAAGACAAGCAGATGTTAACTCACTTATGCTGTTGTTCGGATTGTTGTGCTACTTGCTTCCAATGCTGTTCAAATATAGTGCTGCCTCAGCTGCTCTCACTATAGACCCTACACTCAACTTGTCAAGAACTTCTAGCATTGTGATGTTGATTGCATACTTTGTGTACATTGTTTTTCAATTGTGGACACACAGGCAGTTGTTTGAAGCTGAAGATGAGGGTGAAGATGGTGAGGATTCAGAAGAACAAGCTGTGATTGGATTATGGAGTGGCATTGCTTGGCTGGTTGGGATGACTGTGTTCATTGCTGTGCTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCCTTGTGTGTAATCGTTGCTTGGATAATGGGAATCAAAATGGACCTGAACTTCAACCTCCTAGAGACAGGTTCCCTTGCTTTGGCAATAATAGTCACAGGCTTCACTTTACAGGATGGGACTTCTCACTACATGAAAGGCCTTATTCTCCTGCTGTGTTACATTGTTATTGGGGCATGCTTCTTCGTACAAAGAACACCCTCCAACCAAGTTGGCATCATGCTTAAACCAGACACTAATGCAGCTTTGGCCTATTGTTTGTCCCTTCCTGAGATGAAGAATGGTGGCATCGATCCAAACCCAAAATCATATTCATTAATGGATTGGTTATTGTTTCATTATTCTGATCACTTTGTCATGATATCCATAAAGAAGGGAAAAAAGGAAGCAGTTTGCAGTGGCTTTGCAAATTGCAAGTATTTAAAGTTGCAACAAGCTGAGAGAAATGAGAATAGACCACTGTGCAAGATGTTCAATATGAAACGTACGTACGTGTGTTCTATCAGAGAGCTGCTTTTGATCCTGTGTACTACGGTAGATGCCAAATGA 1644 0.4337 MASHQQQHVHVQQPWLLENGNLKVLTKESRHGRTAHSMSSNSLRKKSSRTLVSKVPCATIRNVLSNLQEVILGTKLSILIPAIPAAIFADCYGLARPWIFILSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSTNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLKLEQKYDRRQADVNSLMLLFGLLCYLLPMLFKYSAASAALTIDPTLNLSRTSSIVMLIAYFVYIVFQLWTHRQLFEAEDEGEDGEDSEEQAVIGLWSGIAWLVGMTVFIAVLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWIMGIKMDLNFNLLETGSLALAIIVTGFTLQDGTSHYMKGLILLLCYIVIGACFFVQRTPSNQVGIMLKPDTNAALAYCLSLPEMKNGGIDPNPKSYSLMDWLLFHYSDHFVMISIKKGKKEAVCSGFANCKYLKLQQAERNENRPLCKMFNMKRTYVCSIRELLLILCTTVDAK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2006 547 TIGRFAM caca2: calcium/proton exchanger 62 427 - -
Aed9g2006 547 Pfam Sodium/calcium exchanger protein 98 255 IPR004837 GO:0016021|GO:0055085
Aed9g2006 547 Pfam Sodium/calcium exchanger protein 285 422 IPR004837 GO:0016021|GO:0055085
Aed9g2006 547 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 12 437 IPR004713 GO:0006812|GO:0008324|GO:0016021
Aed9g2006 547 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 12 437 - -
Aed9g2006 547 Gene3D - 277 427 IPR044880 -
Aed9g2006 547 Gene3D - 127 276 IPR044880 -
Aed9g2006 547 TIGRFAM cax: calcium/proton exchanger 80 427 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2006 Aed-Chr9 23351558 23355832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2006 11 436 Antiporters AT2G38170 69.037 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2006 K07300 - gmx:100816231 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2006 9 23351558 23355832 Aed9g2006 9 23351558 23355832 ECH
Aed9g2006 9 23351558 23355832 Aed2g1143 2 9471701 9476435 PCT