Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2000 ATGGGGTTTAGTCTGAAAAGGAGGAAGAAGAAGAGAGGAGAAGAAGAAGAAGAAGAAGAAGGAAAGATGCGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGAGTATCCAAGTGGTGGTGCCAGCTTCCAAATGAGACTGTCCTACAGCCCAGCTGCTCAATTCTTCCTCTTTCTGGTTCGATGGACTGACTGTCACCTTGCTGGAGCCTTAGGATTGCTCAGAATTCTTATATACAAGGTGTATTCCCTGCTTCTTCACTGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGATGACCGGAAACAAAAACATCTATGTGCTACTAAGTATAAGATTAAAGATTTGACAAGCAAAGGAAAGCTTTCTGAAATTGACATGGAAAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCAAGGTTGTATTGCCCAACTGCAATCATTCAATGTGTATGAAATGCTACCAAGACTGGCATGGAAGATCTCAATCTTGTCCTTTCTGTCGAGACAGTCTGAAGAGAGTAAGCTCTGATGATCTTTGGATCTACATCAGCAGCAATGAGATTAATGACTTGACTTCAATCAACAAGGAGAATTTGAAAAGACTATTTGTGTACATAGAAAGTTTGCCTCTCATTGCCACACCCTATATTCACCACGTCATATCGTCACCATTAGTGATTGCCAATTAG 753 0.413 MGFSLKRRKKKRGEEEEEEEGKMRKSFKDSLKALEADIQFANTLASEYPSGGASFQMRLSYSPAAQFFLFLVRWTDCHLAGALGLLRILIYKVYSLLLHCVVFPSLLQLHRGITDVDDRKQKHLCATKYKIKDLTSKGKLSEIDMEREEECGICLEMNSKVVLPNCNHSMCMKCYQDWHGRSQSCPFCRDSLKRVSSDDLWIYISSNEINDLTSINKENLKRLFVYIESLPLIATPYIHHVISSPLVIAN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2000 250 MobiDBLite consensus disorder prediction 1 25 - -
Aed9g2000 250 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Aed9g2000 250 MobiDBLite consensus disorder prediction 8 25 - -
Aed9g2000 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 199 IPR013083 -
Aed9g2000 250 SMART ring_2 151 188 IPR001841 -
Aed9g2000 250 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Aed9g2000 250 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 15 250 - -
Aed9g2000 250 PANTHER RING FINGER PROTEIN 41, 151 15 250 - -
Aed9g2000 250 SUPERFAMILY RING/U-box 140 194 - -
Aed9g2000 250 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2000 Aed-Chr9 23315462 23319240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2000 48 192 C3H Transcription Factor Family AT1G04790 27.215 5.84e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2000 K25840 - gmx:100814293 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g2000 9 23315462 23319240 Aed9g2000 9 23315462 23319240 ECH