Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1980 ATGGAGGGGAGAGATGAGGATGTGAGAGTAGGAGCCAACAGGTATGGAGAGAGGCAACCAATAGGAACAGGTGCACAGACACAAGATGATGGCAAAGACTACAGAGAGGAACCACCAGCTCCATTGTTTGAGGCTAGAGAGTTAACATCATGGTCTTTCTACAGAGCAGGCATTGCAGAATTTGTGGCCACTTTCTTGTTTCTTTATGTCACTGTTTTGACTGTGATGGGTGTTGCAAAATCTCCCAGCAAGTGCTCCTCAGTTGGTGTCCAAGGCATTGCTTGGTCATTTGGTGGAATGATCTTTGCCCTTGTCTATTGCACAGCTGGTATCTCAGTTTTCTACTGGTGGACAGAAATGAGAACACACAATTTAGAGACAGGGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTCTTGGCACGCAAGTTATCTCTCACTAGAACAGTGTTCTACATGATCATGCAGTGCTTGGGAGCTATATGTGGTGCTGCTGTGGTCAAGGGCTTCCAATCAAACCAATATGAGAGGCTTGGTGGTGGTGCCAACACTCTCAGTAAAGGGTACTCCAGAGGTGATGGCCTTGGAGCAGAGATTGTTGGCACATTTGTTCTTGTCTACACTGTTTTCTCTGCTACAGATGCAAAGAGAAATGCTAGAGACTCTCATGTTCCTATTTTGGCACCATTGCCAATCGGTTTTGCTGTCTTTCTGGTGCACTTAGCTACAATTCCTATCACTGGAACTGGCATCAACCCTGCTAGAAGTTTAGGTGCAGCCCTTGTATACAACAAGGACCAAGCTTGGGATAACCATTGGATCTTCTGGGTAGGGCCTTTCATTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTAAGGGCCATTCCATTCAATTCAAAATGA 912 0.4616 MEGRDEDVRVGANRYGERQPIGTGAQTQDDGKDYREEPPAPLFEARELTSWSFYRAGIAEFVATFLFLYVTVLTVMGVAKSPSKCSSVGVQGIAWSFGGMIFALVYCTAGISVFYWWTEMRTHNLETGGHINPAVTFGLFLARKLSLTRTVFYMIMQCLGAICGAAVVKGFQSNQYERLGGGANTLSKGYSRGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALVYNKDQAWDNHWIFWVGPFIGAALAALYHQIVLRAIPFNSK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1980 303 Coils Coil 301 303 - -
Aed9g1980 303 CDD MIP 55 294 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 Gene3D Glycerol uptake facilitator protein. 40 300 IPR023271 -
Aed9g1980 303 PRINTS Major intrinsic protein family signature 149 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 PRINTS Major intrinsic protein family signature 112 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 PRINTS Major intrinsic protein family signature 274 294 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 PRINTS Major intrinsic protein family signature 234 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 PRINTS Major intrinsic protein family signature 198 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 TIGRFAM MIP: MIP family channel proteins 59 291 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 MobiDBLite consensus disorder prediction 1 36 - -
Aed9g1980 303 Pfam Major intrinsic protein 47 291 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed9g1980 303 PANTHER AQUAPORIN PIP 1-3 1 303 - -
Aed9g1980 303 SUPERFAMILY Aquaporin-like 46 295 IPR023271 -
Aed9g1980 303 ProSitePatterns MIP family signature. 130 138 IPR022357 -
Aed9g1980 303 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 303 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1980 Aed-Chr9 23130288 23132145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1980 1 303 Major Intrinsic Protein MIP AT4G23400 78.218 1.10e-168 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1980 K09872 - gmx:100809467 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1980 9 23130288 23132145 Aed2g1185 2 10128649 10132494 PCT