Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1974 ATGAGATCAATGAATAGGGGAATTGAAGTGCTATCTCCAGCCTCCTATCTCCAAAACTCCAATTGGTTGTTCCAGGAAAGCAAGGGAGCAAGATGGACTGCAGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGACACCCCTGATAGATGGATGAGGGTGGCAGCCATGATTCCAGGGAAAACTGTTGGTGATGTGATCAAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGCTATACTACTACCAGTTCTTTCACTTTGGAGTGGGTTAACAATCAAGACTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGAGAAAAGGGGTGCTTCCACTAGGCCAACTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTTCTGCTGGGTCTCAAGAAGTATGGTAAAGGTGATTGGAGAAACATCTCTAGGAACTTTGTGACCACAAGAACACCGACTCAGGTTGCAAGTCATGCTCAGAAGTACTACATAAGGCAGCTTACAGGAGGAAAAGATAAGAGGAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAACCTCCTTCATCAGACAGTACTAATAAACTCTCTTCTTCTCCACTTCAGAATCAGAAATTGTCTAGCATGGTTAAGCAGGAATATGAGTGGAAATTGCCATGTGAAGGCATGCCAATCGTTTTCAATTCCACAAGTGGAAACATGTTCATGTCAGCACCACTGCATGGCATTTCCTCGTATGAATCCAGACCACAGGAGCAAAATTTACTAAGACAATCTCCATGGATGCCAGTTTTCACCTTGTGA 879 0.438 MRSMNRGIEVLSPASYLQNSNWLFQESKGARWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIKQYRELEEDVSVIEAGLIPVPGYTTTSSFTLEWVNNQDYDEFKQFCSVGEKRGASTRPTEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYYIRQLTGGKDKRRSSIHDITMVNLQETKPPSSDSTNKLSSSPLQNQKLSSMVKQEYEWKLPCEGMPIVFNSTSGNMFMSAPLHGISSYESRPQEQNLLRQSPWMPVFTL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1974 292 PANTHER TRANSCRIPTION FACTOR DIVARICATA 4 263 - -
Aed9g1974 292 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 187 IPR006447 GO:0003677
Aed9g1974 292 CDD SANT 139 183 IPR001005 -
Aed9g1974 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Aed9g1974 292 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Aed9g1974 292 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Aed9g1974 292 Pfam Myb-like DNA-binding domain 139 183 IPR001005 -
Aed9g1974 292 SUPERFAMILY Homeodomain-like 31 85 IPR009057 -
Aed9g1974 292 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 263 IPR043363 -
Aed9g1974 292 Gene3D - 24 91 - -
Aed9g1974 292 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
Aed9g1974 292 SMART sant 28 80 IPR001005 -
Aed9g1974 292 SMART sant 136 186 IPR001005 -
Aed9g1974 292 CDD SANT 31 77 IPR001005 -
Aed9g1974 292 MobiDBLite consensus disorder prediction 209 228 - -
Aed9g1974 292 Gene3D - 138 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1974 Aed-Chr9 23056039 23058682 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed9g1974 Myb_DNA-binding 5.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1974 - - gmx:100806787 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1974 9 23056039 23058682 Aed3g2131 3 25102943 25105270 ECH
Aed9g1974 9 23056039 23058682 Aed2g1191 2 10243536 10244003 ECH
Aed9g1974 9 23056039 23058682 Aed9g1974 9 23056039 23058682 ECH
Aed9g1974 9 23056039 23058682 Aed3g1828 3 22729269 22731921 ECH
Aed9g1974 9 23056039 23058682 Aed4g2280 4 25365920 25368601 ECH