Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1960 ATGATAGTTGCTGTGGATTTGAATGCCTTGCCTGTGCCAGAGGACGATGAAGATGATTTAGGGGGCCAGGTCGAAGAGTACCATGCACCAGAAGAACGTGAGGAAACTGCAGTTGATATTGCTCGCCGGGAACGTGAAGAAAGAAAAAGAAGGTTAAAAAGAGAACGTTCAGATGACAAACCTGTGCAAATATCACAGTCACCTGGACATGATCAGCTATATCATACTAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCAAGGTTGGTTGAATTGCCCTTCATTTGGCCAGGAAATTTATTGCATGATACCATCCAAGGTTCCACTTGGTGAATCATTCAATGACTGCATCATTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAGCAGAGAGTTTTAGGGAGAAAGCTTGGTCTGGTAATTGATTTGACAAATACTTCTCGATACTATCCAGTAGAAGATTTAAAGAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAAGGGCCGCGATTCTGTACCTGATAATTTATCAGTTAATCATTTTGTCTATGAGGTTACGCAATTTCTAATACGTCAAAAACACTCAAGGAAGTATATACTTGTTCATTGTACACATGGTCATAATCGTACAGGATACATGATCATCCATTATCTGATGCGCACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGCACGTCCTCCAGGAATCTATAAACCTGAATACATTGATGCATTGTATGCATTTTATCATGAAAAAAAGCCTGAAATGATAGTTTGTCCTCCTACCCCTGAGTGGAAGAGAACTCCTGAACTTGTTGATCTCAATGGTGAAGCAATGCCGGATGATGACGATGATGATGGAGTACCAGGCTCTCCTTTGCATGAGATTCATGAGACTGAAACTTTAATGACAAATGATGATGTTTTGGGAGATGAGATACCTAATGATCAGCAAGATGCATTTTGTCAGTTCTGCTTTCAAACACTCAAACTAGGTGTTGGGGCCAGAGGGCACATGCAATTTCCAGGGTCACACCCGGTTTCTTTAAACAGGGAGAATTTACAACTGTTACGACAGCGTTATTATTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGACGGATGTTACTTGATTGATAGAAACTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGAATTACAAATGATGGCGTGGCTGAGAAGACACACCACTTCACATTACTTGATGGGGAGATGATTATCGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTCATATATGATCTGATGGCTGTCAATGGAGTATCAGTAATAGAGCGGCCATTTTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTATCAGAGCAGAAATCCTTACTATAGATATGACATGGAGCCATTCCGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAACGAATTCATTCCGAAACTCTCACATGATGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTACATACCTCGCACTCATGAAGGCCTCTTAAAGTGGAAATATGCTGATCTGAATTCAGTTGATTTTCTCTTTGAGGTGATTGATAACGATTGTCAGCTACTTATTCTGTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATAGGGTTGCATTTGAAGAAGGTTCGAATCCCTTGCATTTTTCTGGAAAGATCATTGAGTGTTCTTGGGATTCTGATAGAAAGGAATGGATATTCAAACGAATCAGAACTGATAAATCAACTCCAAATGACTTTAATACTTATAGAAAGGTGATGCAAAGTATAAGAGACAATATCACGGAAGATGTCCTGTTGAAAGAAATAAAGGAGATAATTCGCCTTCCCATGTATGCCGACAGGATAAGAATTGATAGCAAAGCCAATCACCATGCCAATATGGCACGGCGAAGGTAA 2046 0.3954 MIVAVDLNALPVPEDDEDDLGGQVEEYHAPEEREETAVDIARREREERKRRLKRERSDDKPVQISQSPGHDQLYHTKILKSYDRSKLPQGWLNCPSFGQEIYCMIPSKVPLGESFNDCIIPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVEDLKKEGIKHVKIQCKGRDSVPDNLSVNHFVYEVTQFLIRQKHSRKYILVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDARPPGIYKPEYIDALYAFYHEKKPEMIVCPPTPEWKRTPELVDLNGEAMPDDDDDDGVPGSPLHEIHETETLMTNDDVLGDEIPNDQQDAFCQFCFQTLKLGVGARGHMQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRITNDGVAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNGVSVIERPFYERWKMLEKEVIEPRNQERYQSRNPYYRYDMEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEVIDNDCQLLILYERGKKKLMEGYRVAFEEGSNPLHFSGKIIECSWDSDRKEWIFKRIRTDKSTPNDFNTYRKVMQSIRDNITEDVLLKEIKEIIRLPMYADRIRIDSKANHHANMARRR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1960 681 Gene3D - 549 658 IPR012340 -
Aed9g1960 681 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 276 IPR029021 -
Aed9g1960 681 SUPERFAMILY Nucleic acid-binding proteins 553 665 IPR012340 -
Aed9g1960 681 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 265 IPR020422 GO:0006470|GO:0008138
Aed9g1960 681 Pfam mRNA capping enzyme, C-terminal domain 555 649 IPR013846 -
Aed9g1960 681 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Aed9g1960 681 Pfam mRNA capping enzyme, catalytic domain 355 550 IPR001339 GO:0004484|GO:0005524|GO:0006370
Aed9g1960 681 Coils Coil 38 58 - -
Aed9g1960 681 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 315 551 - -
Aed9g1960 681 SMART dsp_5 119 261 IPR020422 GO:0006470|GO:0008138
Aed9g1960 681 CDD RNA_5'-triphosphatase 90 256 - -
Aed9g1960 681 Gene3D Protein tyrosine phosphatase superfamily 83 297 IPR029021 -
Aed9g1960 681 MobiDBLite consensus disorder prediction 1 69 - -
Aed9g1960 681 MobiDBLite consensus disorder prediction 23 61 - -
Aed9g1960 681 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Aed9g1960 681 ProSiteProfiles ATP-dependent DNA ligase family profile. 437 579 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aed9g1960 681 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Aed9g1960 681 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 681 - -
Aed9g1960 681 Gene3D DNA ligase/mRNA capping enzyme 314 548 - -
Aed9g1960 681 CDD Adenylation_mRNA_capping 343 551 IPR001339 GO:0004484|GO:0005524|GO:0006370
Aed9g1960 681 PIRSF mRNA_capping_HCE 73 681 IPR017074 GO:0004484|GO:0006370|GO:0140818
Aed9g1960 681 PANTHER MRNA-CAPPING ENZYME 3 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1960 Aed-Chr9 22929152 22940399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1960 1 681 Protein tyrosine phosphatase (PTP) family AT3G09100 67.737 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1960 K13917 - gmx:100803597 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1960 9 22929152 22940399 Aed9g1960 9 22929152 22940399 ECH