LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g1957	ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCATCAGAAGGGTCGGCAGGGGTGAAGCTGTCGCCAGTTGAGACTGTTACAGTTGCATGCCCCGACCATCTGATCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCGGCCACTGCTGCTTCCCTTGTTAAGACTTTGGGCCGCAGGTCCCGCCGCCAGCTTGGCGAGCGAGTTCATTTCTGTGTTCGCTGTGACTTCCCAATTGCCATTTATGGACGCCTGAGCCCTTGTGAGCATGCCTTTTGTCTGGATTGTTCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCATAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCGTTTGTGCAGCTCCTCATTGTCTCAAGTCGTTCTTGAAGAAAGCTGACTTTGAAGCTCATATCCAAGAGAGCCACTCCAACCTTCTTCGACCCAGTGCAGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACAGCTTCAGATTCCACTGCTCGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCAAATTCCCAGCAGCATGATCTGGAAGACAAATCTCGCAGGACACCTAGAGAACAACCACCTTCAAGGCAAACCATGCAGTCAAAGCCACCGTATTATGGTCAACAACAACACCCTTCGGATACCATGTCTGGCTCTGTTGGAGGTGGACAACAGGGCTTTCATCAACAAGGTTTTGACATGCAGCATCCCCCACAAGAACCTTCCCAATTTGCTGACAGACAACAATCAGTTGGTCCAGAGACCCCATTTCTGGAGTATCCAACAATGCACCCTGCACAACCTTCCAACCCCTCACTGGTTACTTCAAACCCAATGCTGAACCCCCCCATGCCATTTGGTTACCCCCCTTACCCAAACGAACGAGCTCAACAATTTTACGGTGCTCCATATGATATTCCTAGGCAGGACTCGGGTGCTGATATAGGCATGGACCAGAGTTCATTACTGGGTTTCCCACAAGGTGTCCCAAGTGGCCCAAATTTTCCAGGAAATTATCCTCAGCCCTGGAATTCAGGAATTGGTGGTGTGCCTTTTGAACAAGCACAGGGTAGTGCTATGGCTGTGGATCCAAGGGATGGCAAAGGTATATTGGCACCACAGCCCATGTCACTCCCACCACCACCACCACCTCTACCCCACATGTCACATGGGAAACAGAGCTACTATTCTGGAGAGCTTGGACATGATGGTCAGGGTTATGGGTGGCAGCATGATAACCGTGATGGCTTTGGTAACCAAGGCTAG	1317	0.4958	MLQIRLSKAPASEGSAGVKLSPVETVTVACPDHLILADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCSRSDSMCYLCDERIHKIQTIKMMEGILVCAAPHCLKSFLKKADFEAHIQESHSNLLRPSADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKSRRTPREQPPSRQTMQSKPPYYGQQQHPSDTMSGSVGGGQQGFHQQGFDMQHPPQEPSQFADRQQSVGPETPFLEYPTMHPAQPSNPSLVTSNPMLNPPMPFGYPPYPNERAQQFYGAPYDIPRQDSGADIGMDQSSLLGFPQGVPSGPNFPGNYPQPWNSGIGGVPFEQAQGSAMAVDPRDGKGILAPQPMSLPPPPPPLPHMSHGKQSYYSGELGHDGQGYGWQHDNRDGFGNQG	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed9g1957	438	MobiDBLite	consensus disorder prediction	209	267	-	-
	Aed9g1957	438	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE HAKAI	1	412	-	-
	Aed9g1957	438	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	69	120	IPR013083	-
	Aed9g1957	438	MobiDBLite	consensus disorder prediction	321	438	-	-
	Aed9g1957	438	MobiDBLite	consensus disorder prediction	391	405	-	-
	Aed9g1957	438	ProSitePatterns	Zinc finger C2H2 type domain signature.	125	148	IPR013087	-
	Aed9g1957	438	MobiDBLite	consensus disorder prediction	149	295	-	-
	Aed9g1957	438	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED	1	412	IPR040383	GO:0016567\|GO:0061630
	Aed9g1957	438	MobiDBLite	consensus disorder prediction	149	165	-	-
	Aed9g1957	438	MobiDBLite	consensus disorder prediction	166	195	-	-
	Aed9g1957	438	CDD	RING-HC_HAKAI_like	70	106	IPR040380	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g1957	1	437	C2H2 Transcription Factor Family	AT5G01160	45.759	4.71e-109	324

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed9g1957	K15685		-	gmx:100817582	781.171