Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1939 ATGTCGACTTTGCAGATGTCCCATGTTGATTTGGAGCAAGGGAATGAGAATCATCGGCGTTCGGTTGTTGGGAGTGATGTGAGTGGTGAAGGGAGCTTGTGCTTCTCTGATGCTGATGATGGTTCATGCTATTCCCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGGTGGGGTTGGGGGTGTTCCTCATTCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGTTCTGTGGAGGTGGAAACTAGAACTGGGCTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGTCATGAGTCTGGTGCCCCCATTGAATTGGGATGTTCTTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACATGTGAAATTTGTCATTCTATTGCTCGGAATGTTTACGGAGGAAATGAGGAGTCGACGGAGCATTTGAGCGATGTTAACAGTGCTACCACAGCAGCCACACTCTCCACACCTGCGCCTTCATCAGAGCCTCGAAGATTTTGGCATGGCCATCGCTTCCTGAATTTCTTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCACTTTAATGTGCCATCAACCTAG 708 0.4633 MSTLQMSHVDLEQGNENHRRSVVGSDVSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEGGVGGVPHSHSGRASSVSECSVEVETRTGLPEIKVHLAKVEKDCRICHMGLESDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSIARNVYGGNEESTEHLSDVNSATTAATLSTPAPSSEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPST 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1939 235 ProSiteProfiles Zinc finger RING-CH-type profile. 103 169 IPR011016 GO:0008270
Aed9g1939 235 PANTHER OS01G0850200 PROTEIN 5 234 - -
Aed9g1939 235 CDD RING_CH-C4HC3_MARCH 111 163 - -
Aed9g1939 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 170 IPR013083 -
Aed9g1939 235 Pfam RING-variant domain 111 162 IPR011016 GO:0008270
Aed9g1939 235 MobiDBLite consensus disorder prediction 1 23 - -
Aed9g1939 235 PANTHER ZINC FINGER, RING-CH-TYPE 5 234 - -
Aed9g1939 235 SMART ringv_2 110 163 IPR011016 GO:0008270
Aed9g1939 235 SUPERFAMILY RING/U-box 108 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1939 Aed-Chr9 22782526 22785919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1939 80 235 C3H Transcription Factor Family AT5G05830 64.331 1.72e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1939 - - gmx:100808666 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1939 9 22782526 22785919 Aed3g2117 3 25034009 25037139 ECH
Aed9g1939 9 22782526 22785919 Aed2g1253 2 11179472 11182652 ECH
Aed9g1939 9 22782526 22785919 Aed9g1939 9 22782526 22785919 ECH