Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1928 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGACCACTTGCTCAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATCGTGTTCCTTTACTTGCTGGTTTAAACAGGTGCCGTAAGAGTTGTAGGCTAAGATGGTTGAACTATCTCCGTCCTAACATCAAGAGAGGAAATTTTGCGGAGGAAGAAGTGGAAATGATAATCAAACTCCACAAATTACTAGGCAACAGGACTGCCAATGATGTGAAAAACTATTGGAACTGTCATCTGAGCAAAAAACTAAATGCTCTAGAAGCTGAAGATAATAGACCAATAGGCAGAGAGGCTCAAGTGATTAGGCCACAGCCTAGGAACATAATTGGCTCAAGCTCAGTGAAAAGAAGGACTAATCAGAATGAGTCTCCAACTGAAAAAGGAGCACTTCAACAAGAGAGTAGCATGTCCTCACCGACATTTGATGCTACTCATGATGGACAGAACCACATGATGCTTGAATCACAGCAAGACAACAACATATATGCATGCTTGGACCAACAGGGTATTGTTAGTGGGTTGTCAATGGATTTTCAGTTAGAAGGGTTTGAAGCAATGATGAATGGTGAGGGTGGTAGTAGCAGCCAATGGGATTGGGGTGATTTGCTCTTAGACATGGACTTGTACAAGTGA 666 0.4234 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIIKLHKLLGNRTANDVKNYWNCHLSKKLNALEAEDNRPIGREAQVIRPQPRNIIGSSSVKRRTNQNESPTEKGALQQESSMSSPTFDATHDGQNHMMLESQQDNNIYACLDQQGIVSGLSMDFQLEGFEAMMNGEGGSSSQWDWGDLLLDMDLYK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1928 221 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Aed9g1928 221 PANTHER MYB TRANSCRIPTION FACTOR 5 220 - -
Aed9g1928 221 SMART sant 2 52 IPR001005 -
Aed9g1928 221 SMART sant 55 92 IPR001005 -
Aed9g1928 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Aed9g1928 221 Gene3D - 4 55 - -
Aed9g1928 221 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Aed9g1928 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 220 - -
Aed9g1928 221 Gene3D - 58 112 - -
Aed9g1928 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 94 IPR017930 -
Aed9g1928 221 MobiDBLite consensus disorder prediction 116 156 - -
Aed9g1928 221 CDD SANT 5 50 IPR001005 -
Aed9g1928 221 SUPERFAMILY Homeodomain-like 6 77 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1928 Aed-Chr9 22699290 22700850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1928 5 124 MYB Transcription Factor Family AT1G66370 51.773 3.02e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed9g1928 Myb_DNA-binding 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1928 K09422 - gmx:100798101 374.785