Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1887 ATGAGCTCTTCTAGTCTTATTGATTCACCTACTAATAACTACCCTTCCTCCTATGATGATGACCACTCATCATGGGAAGAACAAGCCTTTGCAAAAGATGCAGCTTGGTCTGGTTGCATATGGCCACCTCGTTCATACTCTTGTAGCTTTTGCAGAAGGGAATTTAGGTCAGCACAGGCTTTAGGTGGCCACATGAATGTTCATAGAAGAGATAGAGCAAGACTGAAGCAGCAGCCATATAGCCCTCAGAATCATGATCATGATCTTGAGAAAACCACTCAACCACCCCAGAATTCAGTTCAGATTTCTTTTACTTCTTTGGGTTACTTATACCCTTCTTTGCCTCATAACAGTACTAACCCTAATTCTGATCCTTGTTCTTCTTCTCATGTTCCTGCTTCACCTTCCAAGGTTTTAGCCACATCAATCAACAAGAGAATCAGAGAGAAACCCCAGATTCCACTTTACAAAGGGTGTTACGAGTCTTCTCCTGATCTCATTCCTTCAAATCCCTGGTCAAATTTAACTGAAGACTTTAGATTTTGTTCAAGTAGGCTCGATCCTGAAGAAGCTGGTGTTGAGAAAATTTTGAAGGGATTGGATTCTGGTTGTAATGATAAAACTGATGTGGCTGTTCAGTACTTTGAGACTAAGGAGAAAGATACAAGTTTCAAGAAGATGAAAGCAGATGCTTCATCCATTATTCCATTCTTCCCCAAATCATCATGTTCAGTTGATAGGAATCATATGCAGTCACAGATGTTTGAATTTAGCCCTAGTTCCATAGAAGAAGAACTAGATCTGGAGCTAAGGCTTGGTAATAGGTCCAAGGTATAG 837 0.405 MSSSSLIDSPTNNYPSSYDDDHSSWEEQAFAKDAAWSGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPYSPQNHDHDLEKTTQPPQNSVQISFTSLGYLYPSLPHNSTNPNSDPCSSSHVPASPSKVLATSINKRIREKPQIPLYKGCYESSPDLIPSNPWSNLTEDFRFCSSRLDPEEAGVEKILKGLDSGCNDKTDVAVQYFETKEKDTSFKKMKADASSIIPFFPKSSCSVDRNHMQSQMFEFSPSSIEEELDLELRLGNRSKV 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1887 278 SMART c2h2final6 46 68 IPR013087 -
Aed9g1887 278 MobiDBLite consensus disorder prediction 1 19 - -
Aed9g1887 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Aed9g1887 278 Gene3D Classic Zinc Finger 42 103 - -
Aed9g1887 278 MobiDBLite consensus disorder prediction 1 22 - -
Aed9g1887 278 SUPERFAMILY beta-beta-alpha zinc fingers 43 73 IPR036236 -
Aed9g1887 278 Pfam C2H2-type zinc finger 46 70 - -
Aed9g1887 278 PANTHER OS07G0101800 PROTEIN 15 278 - -
Aed9g1887 278 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Aed9g1887 278 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 15 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1887 Aed-Chr9 22377448 22378284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1887 23 77 C2H2 Transcription Factor Family AT2G37740 83.636 1.82e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed9g1887 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1887 - - gmx:100810800 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1887 9 22377448 22378284 Aed3g2090 3 24818517 24819230 ECH
Aed9g1887 9 22377448 22378284 Aed9g1887 9 22377448 22378284 ECH