Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1886 ATGGAATTCAATTCCCAACAAAACCCTAACAAATCTGAGATAAGATGGAGCCAACAAGATGATCAAGGTGGTACTGGATCACAAGTGAAGTCTTATTCTTGTTCCTTTTGCAAAAGAGGGTTCTCAAATGCACAGGCACTAGGAGGCCACATGAATATCCATAGAAGAGATAGGGCAAAGCTGAAGCAATGTTCTTCTGAGGATCAAAACTTGCTTTCATTGGAAATCTCAAACAAGACCACAAATATTGATCCTTCTGAAGAGAAACATGCTAGAAATCCTCACAAATTACCATTCAATTTTCCTCACAAAGATGATAATCATCATCACATTCATGCACCACATCTTCCTTCTTTTGTTTTGGGGCAGATGGTTGAGGAGAAGAAAGCTGAACTAGACCTTGAGCTTAGGCTAGGTCTTCATCCTCATCATGAGTCAGCAACATTGAACACTAGATCATTCTTTTGA 468 0.3932 MEFNSQQNPNKSEIRWSQQDDQGGTGSQVKSYSCSFCKRGFSNAQALGGHMNIHRRDRAKLKQCSSEDQNLLSLEISNKTTNIDPSEEKHARNPHKLPFNFPHKDDNHHHIHAPHLPSFVLGQMVEEKKAELDLELRLGLHPHHESATLNTRSFF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1886 155 Gene3D Classic Zinc Finger 6 94 - -
Aed9g1886 155 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Aed9g1886 155 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Aed9g1886 155 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 80 143 - -
Aed9g1886 155 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 2 69 - -
Aed9g1886 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Aed9g1886 155 PANTHER OS07G0101800 PROTEIN 80 143 - -
Aed9g1886 155 PANTHER OS07G0101800 PROTEIN 2 69 - -
Aed9g1886 155 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1886 Aed-Chr9 22369528 22369995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1886 25 151 C2H2 Transcription Factor Family AT3G53820 34.559 1.32e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed9g1886 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1886 - - gmx:100527901 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1886 9 22369528 22369995 Aed9g1886 9 22369528 22369995 ECH