Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1875 ATGGCATCACTTGGATCTTCGTCTTCATTCTGGTGCTACAGATGCAACCGCATCGTTAGGGTTCAGCAAAACGACGCCGTTCCCCTCTGCCCCGATTGCCACTCCGGTTTCCTCGAGGAGCTCCGAACCCCTACCCACTCGCGCCGATCCACGCGCGGCGGAGGCGGCAGCGGCGGGTCCCCCTTCAACCCGGTCATCGTCCTGCGCAACGGAAACGACGTCGTCTCCCCCGAAACGCGCGGCAACTTCGATCTCTACTACAACGACGCCGTCTCCGGCCCGAGCTCCCTCCGCCCCCTGCCGCAGGGAGTGTCCGACTTCCTCATGGGCTCCGGCTTCGACAACCTCCTCGACCAGCTCGACGGCGCGCCGCCGCCGCATCCCGCGGCGGCCTCCAAGGCGGCGATCGAGTCCATCCCGGTCGTGAAGATCCTCGCGAGCCACGCCTATGCCGAATCCCACTGCGCGGTCTGCATGGAGAATTTCGAAGTCGACTGCGACGCACGTGAGATGCCGTGCGGCCACGTGTACCATTCCGATTGCATCGTTCCGTGGCTCTCTGTGAGAAACTCGTGCCCCGTGTGCCGCCACGAGGTTCCTTCCGATGAAACCGATGATAGTAATAATAACAGTAACAACACTGTAGGGTTGACTATTTGGAGACTCCCCGGGGGCGGATTCGCTGTGGGAAGGTTCATCGGAGGGAGGGAGCTCCCGCTCGTCTACACGGAGATGGACGGCGGCTTTAACGGCGCTAACGGCGTTCCCAGGAGAGTCGCTTGGGATAGCTCCGTTGCTAGGTCTAGAGAAACCAGAGGACTCGGAGCTGCTTTCAGAAATCTCGTCTCGTATTTCGGTAGGGTTCGCACCTCGTTTTCTAGCGGGACGAGAAATTCGCGCAGATCTCGCTCTGCCTCCACCGTTTTTTCTAGGTTCAGAGCCTCTTCTTAG 951 0.6057 MASLGSSSSFWCYRCNRIVRVQQNDAVPLCPDCHSGFLEELRTPTHSRRSTRGGGGSGGSPFNPVIVLRNGNDVVSPETRGNFDLYYNDAVSGPSSLRPLPQGVSDFLMGSGFDNLLDQLDGAPPPHPAAASKAAIESIPVVKILASHAYAESHCAVCMENFEVDCDAREMPCGHVYHSDCIVPWLSVRNSCPVCRHEVPSDETDDSNNNSNNTVGLTIWRLPGGGFAVGRFIGGRELPLVYTEMDGGFNGANGVPRRVAWDSSVARSRETRGLGAAFRNLVSYFGRVRTSFSSGTRNSRRSRSASTVFSRFRASS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1875 316 SUPERFAMILY RING/U-box 135 202 - -
Aed9g1875 316 SMART ring_2 155 195 IPR001841 -
Aed9g1875 316 Pfam zinc-ribbon 9 41 IPR039525 GO:0061630
Aed9g1875 316 Pfam Protein of unknown function (DUF1117) 215 307 IPR010543 -
Aed9g1875 316 Pfam Ring finger domain 154 196 IPR001841 -
Aed9g1875 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 275 - -
Aed9g1875 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 275 - -
Aed9g1875 316 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Aed9g1875 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 202 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1875 Aed-Chr9 22304278 22305228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1875 99 212 C3H Transcription Factor Family AT5G01980 41.322 3.66e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1875 - - gmx:121172634 469.159