Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1870 ATGAGAAACAAAACCACGCACACCACTTTAACCCCATGTCTCAAACTTGCCATTTTTCTTCTCATACTACAAACATTGTTCCATGGCATCAGTGAGGCCAAAACCAAAACCAAACCCTTAGCTTTGGCACTAAAATCACAAGTGATCCCATCTGGGTATCTCCCAAGACCCCCCAACAAGCTTCGGTTCCACCACAACGTGAGCCTCACAATCTCCATCACTGTTGGCACGCCCCCACAGAACGTGTCCATGGTCATTGACACGGGAAGCGAACTCTCCTGGCTACACTGTAATAATAATAATGCAGACACCAACACAACCGTACCCGACCCGTTTTTCGACCCGAATGCCTCTTCTTCGTACACCCCCATTTCGTGCTCCTCGCCAACCTGCACGACTCGAACCCGAGACTTCCCCATACCGGCTTCGTGCGACTCCAACAACCTCTGCCACGCGATGCTCTCCTACGCCGACGCGTCTTCCTCGGAGGGGAACCTCGCTTCGGACACGTTCGGGTTCCGGTCATCCGTTAACCCGGGAATTGTGTTCGGGTGCATGAACTCTTCCTACAGCAGTGACTCCGGGTCGGATTCCAACACAACCGGGTTATTGGGTTTAAACCTCGGGTCACTCTCGTTTGTTTCTCAGTTAAAAATACCCAAATTCTCGTACTGCATATCGGGTTCGGATTTCTCGGGCATTTTACTTCTCGGGGAGTCCAATTTCTCGTGGGGCGGGTCGTTAAACTACACTCCCATGATTCAAATATCCACTCCTTTACCTTACTTTGACAGGTCCGCGTACACGGTTCGGTTCGAAGGAATTAAAGTTTCTGATAAGCTATTAAATATATCGGGTAATTTTTTTGTTCCGGACCATACTGGAGCGGGTCAAACCATGTTTGATTTGGGTACCCAATTTACGTATTTACTCGGTCCGGTTTATAATGCATTAAGAGATGAGTTTTTGAACCAAACAAATGGTACATTGCCGGTATTGGATGATCCGAATTTTGTTTTTCAGATAGCGATGGATCTATGTTATCGGGTGCCCATGAACCGGTCCAAATTGCCCGAGCTACCGAGTGTGAGTTTGGTTTTTGAGGGGTCTGAGATGCGGGTTTCGGGTGACCAACTTTTATACCGGGTTCCGGGTTTGGTTCGGGGCAATGATTCCGTTTATTGCTTCACCTTTGGGAATTCGGATCTTCTTGGTGCTGAGGAATTTATCATTGGGCATCACCAACAACAGAATATGTGGATGGAGTTTGATCTTGTGGAACATAGGGTTGGAATGGCTCATGCACGTTGTGATTTGGTTGGGCAAAGGCTACTTGGTTTGGGCTGA 1347 0.4811 MRNKTTHTTLTPCLKLAIFLLILQTLFHGISEAKTKTKPLALALKSQVIPSGYLPRPPNKLRFHHNVSLTISITVGTPPQNVSMVIDTGSELSWLHCNNNNADTNTTVPDPFFDPNASSSYTPISCSSPTCTTRTRDFPIPASCDSNNLCHAMLSYADASSSEGNLASDTFGFRSSVNPGIVFGCMNSSYSSDSGSDSNTTGLLGLNLGSLSFVSQLKIPKFSYCISGSDFSGILLLGESNFSWGGSLNYTPMIQISTPLPYFDRSAYTVRFEGIKVSDKLLNISGNFFVPDHTGAGQTMFDLGTQFTYLLGPVYNALRDEFLNQTNGTLPVLDDPNFVFQIAMDLCYRVPMNRSKLPELPSVSLVFEGSEMRVSGDQLLYRVPGLVRGNDSVYCFTFGNSDLLGAEEFIIGHHQQQNMWMEFDLVEHRVGMAHARCDLVGQRLLGLG 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1870 448 Pfam Xylanase inhibitor C-terminal 267 432 IPR032799 -
Aed9g1870 448 Gene3D Acid Proteases 62 239 IPR021109 -
Aed9g1870 448 PANTHER ASPARTYL PROTEASE-RELATED 18 445 IPR001461 GO:0004190|GO:0006508
Aed9g1870 448 PANTHER ASPARTIC PROTEINASE PCS1 18 445 - -
Aed9g1870 448 Pfam Xylanase inhibitor N-terminal 71 238 IPR032861 -
Aed9g1870 448 CDD pepsin_A_like_plant 70 437 IPR034161 -
Aed9g1870 448 SUPERFAMILY Acid proteases 70 438 IPR021109 -
Aed9g1870 448 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 84 95 IPR001969 GO:0004190|GO:0006508
Aed9g1870 448 Gene3D Acid Proteases 240 440 IPR021109 -
Aed9g1870 448 ProSiteProfiles Peptidase family A1 domain profile. 69 433 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1870 Aed-Chr9 22265651 22266997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1870 71 438 Miscellaneous Gene Families AT1G77480 24.479 1.16e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1870 - - var:108328529 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1870 9 22265651 22266997 Aed9g1870 9 22265651 22266997 ECH
Aed9g1870 9 22265651 22266997 Aed1g1241 1 11844990 11845952 ECH