Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1851 ATGGCTGCCATTGCTGTTTTCCTCCACATTGCATCATTGGCCTCTCTTTTCATTGCAGCAAGTGCAAGAATCCCTGGACTTTTCACCGGTGGACCCTGGCAGAGTGCTCATGCTACCTTCTACGGTGGCAGTGATGCCTCTGGAACAATGGGCGGTGCGTGCGGGTACGGAAACCTCTACAGCCAGGGCTACGGCGTGAACACGGCGGCGCTGAGCACTGCTCTGTTCAACAACGGGCTGAGCTGCGGCGCGTGTTTTGAGATCAAGTGCGACCAGGATCCGCGCTGGTGCAACCCGGGGAACCCCTCGATCCTGATCACCGCCACCAACTTCTGCCCTCCGAACTTCGCTCTCCCCTCCGACAACGGCGGCTGGTGCAACCCTCCGCGCCCGCACTTCGACCTCGCCATGCCAATGTTCCTCAAGATCGCACAGTACCGCGCCGGAATCGTCCCCGTCGCGTACCGCCGGGTGCCATGCAGGAAGACAGGGGGCATCAGATTCACAATTAACGGCTTCCGTTACTTCAACCTGGTTCTGATCACCAACGTCGCGGGTGCAGGGGATATCGTGCGCGTGAGCGTGAAAGGAAGCAAAACCGCGGCGTGGATGAGCATGAGCCGCAACTGGGGGCAAAATTGGCAATCCAACGCGGTTTTGGTGGGCCAGGCCCTCTCCTTTAGGGTTACCGGCAGTGACCGACGCACCTCAACCTCATGGAACGTGGCACCATCCAATTGGCAGTTCGGACAAACCTTCACGGGCAAGAATTTCCGTGTCTAA 783 0.5888 MAAIAVFLHIASLASLFIAASARIPGLFTGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGNPSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRVPCRKTGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSKTAAWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1851 260 Pfam Lytic transglycolase 68 155 IPR009009 -
Aed9g1851 260 Gene3D - 20 161 IPR036908 -
Aed9g1851 260 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Aed9g1851 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Aed9g1851 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Aed9g1851 260 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Aed9g1851 260 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Aed9g1851 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Aed9g1851 260 PANTHER EXPANSIN 6 259 - -
Aed9g1851 260 Pfam Expansin C-terminal domain 166 244 IPR007117 -
Aed9g1851 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Aed9g1851 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Aed9g1851 260 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Aed9g1851 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Aed9g1851 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Aed9g1851 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Aed9g1851 260 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Aed9g1851 260 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Aed9g1851 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Aed9g1851 260 Gene3D - 165 258 IPR036749 -
Aed9g1851 260 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Aed9g1851 260 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Aed9g1851 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Aed9g1851 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Aed9g1851 260 PANTHER EXPANSIN-A15 6 259 IPR002963 GO:0009664
Aed9g1851 260 SMART dpbb_1 68 155 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1851 Aed-Chr9 22122796 22125959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1851 16 260 Expansin Gene Family AT2G39700 86.939 2.10e-161 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1851 - - gmx:547955 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1851 9 22122796 22125959 Aed3g2072 3 24658300 24659975 ECH
Aed9g1851 9 22122796 22125959 Aed9g1851 9 22122796 22125959 ECH
Aed9g1851 9 22122796 22125959 Aed1g1226 1 11764599 11766030 ECH
Aed9g1851 9 22122796 22125959 Aed5g0394 5 2809758 2812012 ECH