Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1820 ATGGCGGAACCGGAGCCTTCTCGCTTGCTCCGGAACCTGACCCGAATCGCCACGCAAATCTCCAACCTCCCCTCCGATTTCAAACCCGTCCTCAAGCCGCAATGCTGCGACCTCGCTCGCCGAATAAGGTTCCTCGCTCCTCTCTTCCAGGAGTTGCGGGACGACGTCGTGTCGGGCCGCGAGGTTCACTTTCACGCGCTCGACGACGCGCTCTTCAGGGCCATGGAACTGCTCCAATCCGCCACCGCCGCCAGCCAGGTTTTCACGATACTGGATAGACAGCAAGTTAAGCAGAGATTCACTGATGTTGCTGTTCGTTTTGAACATGCGTTGAGGAAGATCTCCTTTGACGAGCTTGATGTTTCTGAAGAAATTAAGGAGCAGGTTGCACTTGTGACCACTCAGTTTACAAGAGCCAAAGAGCAGTTTGATCCATTGGGTTTTCAGCTTTATGAGTACCTGTTGTCTATTTACAACCAGAGCTATGATGTGAATACGGAAACTGCTGAACTACGCGTAATCTGTGAAAAGCTACAATTTCTCAAGGTGGATGACATCAAGCAAGAGTCACTTGCTCTGCAAAAGATGGTTGTAGACAGGGGTTGTGGCCATTCTCAGAAAAACATACAGGATATGTCATTAGTAGTGCTGAAAAAAATCCAAGATTTCTTGGTGATGGAATCTGGAAACAATATTGTGTCACCAAGTGAGGATTTCTCTCGTCATACTAATGAGCCATATGGGAAACTATGTCAACAATCACTGGTTATACCTGATGAGTTTCGTTGCCCAATATCTCTAGAGCTAATGAAAGACCCTGTTATCATTTGCACAGGGCAGACATATGAACGATCTTGCATAAAGAAATGGCTTGAAGCAGGGCATGCAACATGTCCCAAGACTCAACAGATTCTTTCCAGCTCCATCCTCATACCCAACCATGCTTTATATGGCCTGATTTCAAGTTGGTGTGAGACAAATGGAGTGGAACCACCTAAAAGGTTTGGAAATTTATGGCTCTGTAAGACAACATCAGATGGCTCTTCGGAATTAATAGATCTTGATATCTTAGTGAGCAAACTTTCTTCTTCCAATGATATCGAGGATGTACGATGCGCAGCAGGGGACCTCCGACTTCTTGCCAAGCAAAATGGTCAAAATCGAATGCTGATTGCTGAAGCTGGTGCTATACCCCACCTTGTTGATCTCCTCTATGCACTTGATGCTGGCACCCAAGAGCATGCAGTTACTGCTCTCCTGAACTTGTCTATCAATGTGGATAATAAAGAGCACATCATGGCTTCAGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGCATGGAAGCTCGGGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGCGGTGGATGAGAACAGGGTGGCAATTGGTGCATCTGGAGCGATCCAGGCATTAGTTACTCTATTTTGCAAGGGAAGTCAAAGAGGGAAGGTGGATGCTGCAAGAGCACTATTCAATCTGTGTTTATCTCAAGGGAACAAAGGACGGGCAATTAGGGCCGGTATCGTGCCTAAGTTGATAGAATTGCTGACAGAACCTGATGGGGAGATGAAGGACGAGGCATTAGCATTAATAGCTGCAGTTGCTAGCCATCCTGATGGACCAGCAGAAATTGGATCTATGAATGTTGTATCTGCTTTGGTGGAGTTAGTCGGTAATGGATCTCCTAGAAACAAAGAGAACGCAACTTCGGTGTTGGTTCTCCTCTGCAATGGAGATCCTCTACATTTGCCAATTGTCAGTTCGCTTGGGGTGATCAATCCTCTCTTGGACCTGGCTGAAAATGGTTCCGTAAGGGCCAAGCGGAAAGCTTCCCAGCTTCTTGAGTTGTTGATAGGAAACCATTGTGAATAA 1905 0.4667 MAEPEPSRLLRNLTRIATQISNLPSDFKPVLKPQCCDLARRIRFLAPLFQELRDDVVSGREVHFHALDDALFRAMELLQSATAASQVFTILDRQQVKQRFTDVAVRFEHALRKISFDELDVSEEIKEQVALVTTQFTRAKEQFDPLGFQLYEYLLSIYNQSYDVNTETAELRVICEKLQFLKVDDIKQESLALQKMVVDRGCGHSQKNIQDMSLVVLKKIQDFLVMESGNNIVSPSEDFSRHTNEPYGKLCQQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHATCPKTQQILSSSILIPNHALYGLISSWCETNGVEPPKRFGNLWLCKTTSDGSSELIDLDILVSKLSSSNDIEDVRCAAGDLRLLAKQNGQNRMLIAEAGAIPHLVDLLYALDAGTQEHAVTALLNLSINVDNKEHIMASEAVPGILHVLENGSMEARENAAATFFSLSAVDENRVAIGASGAIQALVTLFCKGSQRGKVDAARALFNLCLSQGNKGRAIRAGIVPKLIELLTEPDGEMKDEALALIAAVASHPDGPAEIGSMNVVSALVELVGNGSPRNKENATSVLVLLCNGDPLHLPIVSSLGVINPLLDLAENGSVRAKRKASQLLELLIGNHCE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1820 634 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Aed9g1820 634 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 628 - -
Aed9g1820 634 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Aed9g1820 634 PANTHER U BOX DOMAIN-CONTAINING 7 628 - -
Aed9g1820 634 SUPERFAMILY RING/U-box 256 333 - -
Aed9g1820 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
Aed9g1820 634 Gene3D - 495 634 IPR011989 -
Aed9g1820 634 SUPERFAMILY ARM repeat 354 628 IPR016024 -
Aed9g1820 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 330 IPR013083 -
Aed9g1820 634 Pfam Armadillo/beta-catenin-like repeat 386 423 IPR000225 GO:0005515
Aed9g1820 634 Pfam Armadillo/beta-catenin-like repeat 467 505 IPR000225 GO:0005515
Aed9g1820 634 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Aed9g1820 634 Gene3D - 8 117 IPR036537 GO:0007166
Aed9g1820 634 CDD RING-Ubox_PUB 261 303 IPR045210 -
Aed9g1820 634 Gene3D - 346 494 IPR011989 -
Aed9g1820 634 SMART arm_5 425 465 IPR000225 GO:0005515
Aed9g1820 634 SMART arm_5 548 588 IPR000225 GO:0005515
Aed9g1820 634 SMART arm_5 507 547 IPR000225 GO:0005515
Aed9g1820 634 SMART arm_5 384 424 IPR000225 GO:0005515
Aed9g1820 634 SMART arm_5 590 630 IPR000225 GO:0005515
Aed9g1820 634 SMART arm_5 466 506 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1820 Aed-Chr9 21813763 21820611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1820 3 626 U-box Gene Family AT3G46510 48.885 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1820 - - var:108326899 979.933