Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1805 ATGTCAGGGCAGAGAAGGTCATCAAGAGCTACTTCAAAGTTCACTGAGAATGAAATTAATGAACTTGTGTCTAGGTTACAACTTCTGCTTCCTCAAGTGAACCCAAGACCCAACTCAAGGCAATCAGCGTCGAAGATCTTGCAGGAAACCTGTTGTCACATTAGGAGGCTGCAGGAAGAGGTGGAGCAGCTCAGTGAGAGGCTATCAGACCTCATTGATTCTGTGGATATCAGTGACATTGACAGAAGAACTTTACATAACTTTTTGCAACAACAATAA 279 0.4301 MSGQRRSSRATSKFTENEINELVSRLQLLLPQVNPRPNSRQSASKILQETCCHIRRLQEEVEQLSERLSDLIDSVDISDIDRRTLHNFLQQQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1805 92 Gene3D - 16 91 IPR036638 GO:0046983
Aed9g1805 92 Pfam Helix-loop-helix DNA-binding domain 18 58 IPR011598 GO:0046983
Aed9g1805 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 57 IPR011598 GO:0046983
Aed9g1805 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 72 IPR036638 GO:0046983
Aed9g1805 92 PANTHER DNA BINDING PROTEIN 1 91 - -
Aed9g1805 92 Coils Coil 47 74 - -
Aed9g1805 92 PANTHER DNA BINDING PROTEIN 1 91 IPR044172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1805 Aed-Chr9 21627254 21629102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1805 1 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 49.367 3.45e-16 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed9g1805 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1805 - - gmx:100810266 93.2041