Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1803 ATGAAGGTGCTGCTGCTGCTGCTCGCGGCGCTTGTTTTAGCTTCCGCTTCCGACGCAGTCGTCAATGGCAATGAGATGCAGAAACATGAAGCCACGGAATCAAGGGATGTGGTTGAGGAAGAGAAGTTGCTAGTGCAGAGCTTGAACAATTCGTCAATGGCTGAAAGGTCAGGGGGTGCTTTGAATGAACATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATGAGAGCATACGCAACCACACAGAGAGAAGGAATCTGAACTTCTTCTCATGCGGGACCGGGAATCCAATCGACGACTGCTGGCGGTGCGACAAGCGCTGGTACGCCCGGCGCAAGCGGCTGGCGAACTGCGGCATCGGGTTCGGGCGCAACGCCATCGGCGGGCGCGACGGGCGCTACTACGTCGTTTCGGACCCTAACGACGACGACCCGGTTGACCCGAAACCGGGAACGCTCCGTCACGCCGTGATCCAGGACCGCCCCCTGTGGATCGTGTTCAAGCGCGACATGGTCATAACCCTAAAACAGGAACTCATCATGAACAGCTTCAAGACCATCGACGGACGCGGCGTGAACGTCCACATCGCGTACGGCGCGTGCATCACCATCCAGTTCGTGACCAACGTGATCATCCATGGGTTGCACATTCACGACTGCAAGGTGACCGGGAACGCCATGGTTCGGAGCTCGCCGTCTCACTATGGGTGGAGGACGCTCGCGGATGGGGACGGGATCTCCATCTTTGGCTCCAGCCACATTTGGATTGATCATAACTCGCTCTCGAGTTGCGCTGATGGACTTGTGGATGCTGTTATGGGGTCCACTGCTATTACCATTTCCAACAACTACTTCACCCACCACAACGAGGTTATGCTACTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTAACCATTGCTTACAACCATTTTGGAGAAGGTCTTATCCAAAGAATGCCCAGGTGCAGACACGGATATTTCCACGTGGTTAACAACGACTATACCCACTGGGTAATGTATGCAATTGGAGGCAGTGCTGACCCCACAATTAACAGCCAGGGCAACAGATACCTTGCTCCTCTGAACCCTTTTGCTAAGGAGGTGACAAAACGAGTGGACACAGGTTCATCCGTGTGGAAAAGCTGGAATTGGAGGACAGAGGGAGATCTTTTGCTCAATGGAGCCTTTTTCACTTCATCAGGAGCAGGAGCTGCAGCAAGCTATGCCAGAGCCTCGAGTTTGGGGGCAAAGTCGTCTTCTTTGGTTGGTACCATCACCTCTGGAGCTGGTGTTCTTAGCTGCAGCAGGGGTGTCATGTGTTAA 1341 0.5377 MKVLLLLLAALVLASASDAVVNGNEMQKHEATESRDVVEEEKLLVQSLNNSSMAERSGGALNEHAVDNPEEIASMVDESIRNHTERRNLNFFSCGTGNPIDDCWRCDKRWYARRKRLANCGIGFGRNAIGGRDGRYYVVSDPNDDDPVDPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFVTNVIIHGLHIHDCKVTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSSCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPLNPFAKEVTKRVDTGSSVWKSWNWRTEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTITSGAGVLSCSRGVMC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1803 446 PANTHER PECTATE LYASE 47 442 - -
Aed9g1803 446 PANTHER PECTATE LYASE 18-RELATED 47 442 IPR045032 GO:0030570
Aed9g1803 446 SMART amb_all 172 369 IPR002022 -
Aed9g1803 446 Gene3D - 97 439 IPR012334 -
Aed9g1803 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Aed9g1803 446 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Aed9g1803 446 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Aed9g1803 446 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Aed9g1803 446 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Aed9g1803 446 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Aed9g1803 446 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Aed9g1803 446 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Aed9g1803 446 SUPERFAMILY Pectin lyase-like 75 440 IPR011050 -
Aed9g1803 446 Pfam Pectate lyase 181 361 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1803 Aed-Chr9 21613872 21620138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1803 30 446 Polysaccharide Lyase AT4G13710 76.471 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1803 K01728 - gmx:100809277 816.609