Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1783 ATGATGAAGTCCACCATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTGATGAAAAGAAAATTGCATGCTGCTGCTAAAGCTTTTGTGACAGAGGGGAAAGTTTCCACGGATCCCGTAGCAATTGATGCACCTGGAGGATTTCTTTATGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAATCAAAAGCTAGAGAACAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAACGCAGTGCACAGTTACAGCGAAGAGATCCTAATCATCCTGCCCTTGGTGGTTCCATAAATGCCATGAACTCTGAAGGAATGCTGGGGCAGCCACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGCAGCTAGTCATCAAGGCCAATTGGTTCATGGAAATTCAGGGAATATGTCCACTGCATTGCAGCAAATTCCAGGGCGGGCTCCTTTAACCACTGACAAAGGAGAAGTTAATTTAGGTGCGACTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACCAGCATTTTTACAATCAAAATCTGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAAATAAGACCTAATTTGGGTGTACAAGTTCAGAAGCCCAATTTGGCAACCCAGAACCAATTTGTTTTGGCATCACAACAGCAACAGGTATTGGCACAAGCTCAGGCACAGGCACAAAATAACCTTGGGAATTCTAATTATGGTGACATGGATCCTCGTAGACTTTCTGGTCTTCCTCGAGGTAGTTTAAGCACAAAGGATGGTCAGTCTACCAGAAATGATGGATCTATTTGCTCCCAAATGCAGTCAGATTCACCCAAGCAGATGAAGATGGCTCAGTCACAACATTCATTATCCCAACCACAGGAGCAACTACAGCAACAGGTTAGTAACAGAAAAAGAAAATCTGGAGCTGCCAATAGCACTGGTACTGGTAACACTGCTGTTCCTTCCCCTACTTCATCACCATCAACACATACACCTGGTGATGCATTAAATACAGCAAGCAGCATGCAGCATGTTAACAGTGTCCAAAAGGGCATTATGATGTATGGTACAGAAGCAACAGGAGGCCTTGCATCATCGTCGAATTTGCTGGAGGACATGGATCGATTTGGAGATGTTGATGCTTTAGATGATAATGTTGAATCCTTTCTATCAAATGATGGCGGAGATGGTGGAAATCTCTATGGAACAGTGAAACAAAGTCCGGCCGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCTGAAGTTGGTTGCATAAGAACAAGGAACAGCAAAGTTACTTGTTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGACATCTGGAACATGGACACTTTACAGACAGTGAGCACTCCTGCAGAACACAAATCAGTTATTACAGATGTCCGTTTTAGACCAAATTCAACTCAGTTGGCGACTGTTTCAATTGATAAATCTGTGCGGTTATGGGACGCAACCAATCCAAGCCATTGTGTGCAAGAATATAGTGGGCATTTTTCAGCTATAATGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGCTTCTGCGACCGTGAAAATGAAATTCGGTTTTGGAATATTAACTCACCCACCTGCTCCCGTGTAACTAAGGGAGGTAGTGCACAAGTGAGGTTTCAGCCTAGACTGGGGCATCTCCTGGCAGCAGCTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAAGCTGACACACAAATTTCCACCCTCCAGGGACATTCTGAACCAGTGAGCTATATTTGCTGGGATGGGAATGGTGAAACCTTGGCATCTGTGAGTCCTAATTTGGTGAAGGTTTGGAGTTTGACCTCAGGAGAATGCATTCATGAGTTCAACTCCGCCGGGAACCAATTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGGTTGGAGGAGTCTCGGCCTTAGAGTTATGGAATACGACTGAGAACAAAAGCATGACAATTAAGTCACATGAAAATGTAATATCTGCTTTGGCTCATTCTTCTGTCACTGGAATGGTTGCATCTGCAAGTTATGACAACTATGTAAAGCTGTGGAAGTAA 2298 0.4299 MMKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHAAAKAFVTEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQSKAREQQLQMQQLQLMQQRSAQLQRRDPNHPALGGSINAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSAASHQGQLVHGNSGNMSTALQQIPGRAPLTTDKGEVNLGATPKSLPMDTSVYRPAFLQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQIRPNLGVQVQKPNLATQNQFVLASQQQQVLAQAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLSTKDGQSTRNDGSICSQMQSDSPKQMKMAQSQHSLSQPQEQLQQQVSNRKRKSGAANSTGTGNTAVPSPTSSPSTHTPGDALNTASSMQHVNSVQKGIMMYGTEATGGLASSSNLLEDMDRFGDVDALDDNVESFLSNDGGDGGNLYGTVKQSPAEQQKESSKGFTFAEVGCIRTRNSKVTCCHFSSDGKWLASAGDDMKVDIWNMDTLQTVSTPAEHKSVITDVRFRPNSTQLATVSIDKSVRLWDATNPSHCVQEYSGHFSAIMSLDFHPKKTELFCFCDRENEIRFWNINSPTCSRVTKGGSAQVRFQPRLGHLLAAASDKGVSIFDVEADTQISTLQGHSEPVSYICWDGNGETLASVSPNLVKVWSLTSGECIHEFNSAGNQFHSCVFHPSYSTLLVVGGVSALELWNTTENKSMTIKSHENVISALAHSSVTGMVASASYDNYVKLWK 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1783 765 CDD WD40 488 765 - -
Aed9g1783 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 569 611 IPR001680 GO:0005515
Aed9g1783 765 Pfam WD domain, G-beta repeat 522 558 IPR001680 GO:0005515
Aed9g1783 765 Pfam WD domain, G-beta repeat 744 765 IPR001680 GO:0005515
Aed9g1783 765 Pfam WD domain, G-beta repeat 564 602 IPR001680 GO:0005515
Aed9g1783 765 Pfam WD domain, G-beta repeat 489 516 IPR001680 GO:0005515
Aed9g1783 765 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 10 765 - -
Aed9g1783 765 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 765 IPR044716 GO:0003714
Aed9g1783 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 733 765 IPR001680 GO:0005515
Aed9g1783 765 MobiDBLite consensus disorder prediction 310 395 - -
Aed9g1783 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 558 IPR001680 GO:0005515
Aed9g1783 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 733 765 - -
Aed9g1783 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 484 519 - -
Aed9g1783 765 SMART Lish 15 47 IPR006594 GO:0005515
Aed9g1783 765 Gene3D - 618 765 IPR015943 GO:0005515
Aed9g1783 765 MobiDBLite consensus disorder prediction 289 395 - -
Aed9g1783 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 558 - -
Aed9g1783 765 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Aed9g1783 765 Coils Coil 86 106 - -
Aed9g1783 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 525 IPR001680 GO:0005515
Aed9g1783 765 Gene3D - 459 617 IPR015943 GO:0005515
Aed9g1783 765 Pfam LisH 17 42 IPR006594 GO:0005515
Aed9g1783 765 SMART WD40_4 685 724 IPR001680 GO:0005515
Aed9g1783 765 SMART WD40_4 605 641 IPR001680 GO:0005515
Aed9g1783 765 SMART WD40_4 477 516 IPR001680 GO:0005515
Aed9g1783 765 SMART WD40_4 519 558 IPR001680 GO:0005515
Aed9g1783 765 SMART WD40_4 644 682 IPR001680 GO:0005515
Aed9g1783 765 SMART WD40_4 562 602 IPR001680 GO:0005515
Aed9g1783 765 SMART WD40_4 726 765 IPR001680 GO:0005515
Aed9g1783 765 SUPERFAMILY WD40 repeat-like 480 765 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1783 Aed-Chr9 21329182 21338158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1783 560 764 Miscellaneous Gene Families AT5G08390 24.286 1.37e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aed9g1783 WD40 0.0073 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1783 - - gmx:100799686 1310.05