Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed9g1737 | ATGGAAGGTTGCCGGAATCGGAAGGTAACGCTACATGAACAAATGTCAGCTTTAGAAAACAATCGCGCCCGAGTGCTGGCCGGCTTGACCCTTGACGACGTGTTAGCAAACCAGAAGAGACCTTTCTCAGCGCCACCCATCCAAAAACAACAACCACAATCACAACTACAACTACAACTCCTACCGCTGCCACCATCACCATCATTCAATAACCGAACCTTATTTGACATCATCAAAGAAGACGAGAGCAACAAGAAGGACCGTAGATCTTGGAAAGCCTTCAAGGACAAACTACGGCTGAAGCGCGCAGGCTCGGCTTGGACATCGTCAATTCATATCCCGACATCGGATGTTCCTATCCCTAACCCGAATAGCAGAACCTTTACGCAGTTTGGTCGCCGCAACTCGGTTCGAATCCCGACTGAGACTCACTCCGACTCGGACATGTCAAGTCCCTACGATGCTGAGCAAGTGGAGTACCTCGACCCCGCCGCCGACGCCACCGCCAAAGACGACGACTCCGATTCTCCGGCCACCGCGACGGCAGCCGCTCCACCCGCTATCCGCCCTCAATTCAGCCGCCGCGGCTCCACACGCTTCGCCGGCGACGCCTCCATCGAAACCAACACCGCCGGCACGCTACGGCAGCAGCTGTCGCGGCGGAACTCAAACAACATGCAGGTGCAGTCGGAGCCGTACAAGCGAGGGCGCGTGGTGACCTTCCGCGACAGCTTCGACGAAGAGGAGGCCGACGAGGACGGGGAGAAGCCCGGGGAGGGGAGGGCGCTGTCGGCTCGGGAGGCGGTGGCAGCGCAGGAGGCGGCGGAAGCGGCGGCGCAGGTGGGGGATGAGGAGGAGGAGGCGCCGGTGATGATGTCGCTGATGGACCTGCTGGAGGAGACTGACAGGGAGCTGGGGCTTGAAGGATCGAGATATATATTGAGCGATGATGATGATTTTGATGATGATGAAGATGAGGATGAAGATGATGACAATGGAGAGGGTTCTATGGAACACACTTGCTGCATTTGCATGGTGAGGCATAAGGCTGCTGCTTTTATACCCTGTGGCCACACTTTCTGCAAGATGTGTTCAAGGGAGCTTATGGTTAGTAGGGGGAATTGCCCTATCTGCAACAATTTCATCTTGGAGGTTCTTGACATTTTCTGA | 1170 | 0.559 | MEGCRNRKVTLHEQMSALENNRARVLAGLTLDDVLANQKRPFSAPPIQKQQPQSQLQLQLLPLPPSPSFNNRTLFDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDVPIPNPNSRTFTQFGRRNSVRIPTETHSDSDMSSPYDAEQVEYLDPAADATAKDDDSDSPATATAAAPPAIRPQFSRRGSTRFAGDASIETNTAGTLRQQLSRRNSNNMQVQSEPYKRGRVVTFRDSFDEEEADEDGEKPGEGRALSAREAVAAQEAAEAAAQVGDEEEEAPVMMSLMDLLEETDRELGLEGSRYILSDDDDFDDDEDEDEDDDNGEGSMEHTCCICMVRHKAAAFIPCGHTFCKMCSRELMVSRGNCPICNNFILEVLDIF | 389 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed9g1737 | 389 | CDD | RING-HC | 341 | 378 | - | - | |
| Aed9g1737 | 389 | SUPERFAMILY | RING/U-box | 340 | 385 | - | - | |
| Aed9g1737 | 389 | PANTHER | OS01G0917900 PROTEIN | 7 | 389 | - | - | |
| Aed9g1737 | 389 | Coils | Coil | 1 | 21 | - | - | |
| Aed9g1737 | 389 | MobiDBLite | consensus disorder prediction | 246 | 265 | - | - | |
| Aed9g1737 | 389 | MobiDBLite | consensus disorder prediction | 315 | 334 | - | - | |
| Aed9g1737 | 389 | MobiDBLite | consensus disorder prediction | 128 | 152 | - | - | |
| Aed9g1737 | 389 | PANTHER | OS01G0917900 PROTEIN | 7 | 389 | - | - | |
| Aed9g1737 | 389 | MobiDBLite | consensus disorder prediction | 220 | 239 | - | - | |
| Aed9g1737 | 389 | ProSiteProfiles | Zinc finger RING-type profile. | 341 | 379 | IPR001841 | - | |
| Aed9g1737 | 389 | Pfam | Zinc finger, C3HC4 type (RING finger) | 338 | 383 | - | - | |
| Aed9g1737 | 389 | MobiDBLite | consensus disorder prediction | 166 | 212 | - | - | |
| Aed9g1737 | 389 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 316 | 389 | IPR013083 | - | |
| Aed9g1737 | 389 | MobiDBLite | consensus disorder prediction | 311 | 334 | - | - | |
| Aed9g1737 | 389 | SMART | ring_2 | 341 | 378 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed9g1737 | Aed-Chr9 | 20789776 | 20791374 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed9g1737 | 15 | 389 | C3H Transcription Factor Family | AT3G07120 | 32.750 | 7.43e-44 | 154 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed9g1737 | - | - | gmx:100795449 | 494.582 |