Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1686 ATGCAACATACTCAACACAACATCATTCATCATTTTTTTGTAACTGTTTCCTTCATGGAAAACCACCAATTCTTTCTCAATGCTGGTGTGCCCCCTCCTCAGATGCATCATTTTGAGCCATCACCACTGCCGCCACCACCACAACACCACCACCACCACCATCCTTGGCAACAACAATCACTTTCTTCTTCTTCTTCTCCTTCTCCCATGGATGTTCAAGTCACCGTTTTGAATTGTTCAACTCAGCAAGATTGTTTTTTCAACACCACCCCAACATGGAACAAGTCAACGGATCATCATCATGGTCTTCAGTTTGATTCATCAGCTCTGAGTTCAATGGTGTCATCTCCTGCTGCCTCCAATTCCAACATGTCAAGTGAGAGTTTTGTCATCAGAGAGTTGATTGGAAAATTGGGAAACATTGGTGGTGGTGATGCCTCTGATGAGATCTCACCTCACTCTCATTCTTTGGTTGCTGCTGCATCTTCCTACATCAATGGCAATAACAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGATCAACATGAACAATAAGATCCCCGCAATGGTGAAAGAGGGGACACTGAATTCCACTGTGGCTGAATTCTCTGCTGACCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGAAGTTTCAATGGAAGGACCACACAATTGGGCCCCAACAATGCTGAATTGACTCAGAGATTGGTGGAAAATGGGAACCATCTCCCTAGAGTCTCAAGTACTCCATCACTCGAAGTTGTTGTTCTTGGATCTCATGAGGAGATCAAGAACAAGAACAAGAATAACAATTCTCCTCCATTGCAAGACCTAATGGAAGTGGCAAATTCTCAAGAGGAATCTACTATCTCTGAACAAACACCACCAAATGGGGTGAAGAAACCTTCCCCTTATGCGAATTCTAGTTCTAGTTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAAGAAACTTCAACCTCCACCAACAACCCCCCTATGGCTGCTGAAGCTAGCGAAGACTCAAATGCAAAGCGCAGCAAAAAAATCAGTGAATGTGATGATGTGAATAAAAATGAAAATGAAAATGGGCAAGTGAAGGCAGAGGAAGAGTCCAAAGAGGGTAATAATACTAATACTAATAGCAATGGAGATGGATATGATGAGAAACAGAACAACAAGAGTAACACAAAACCTCCTGAGCCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGATAGTCATAGTCTTGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAACAAGGTCACGGGTAAAGCACTAATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTAGCACACGCAATATTCCAAAATGATTCCTCAGCACCACCCTTTTATGGGCAACACCCTCAACAAAACTCAGAAGCAATCCACAGTAACATTCCTAATGGAACCATGACCCACACCTCAGTGGACCCATTAGAAACTACTGAACTGTGCCAAAACCTTGGCATGCATTTACCACACCTAAATGGGTTTAATATTGAAGGTGCCTCTCAGTATCCAATAACATTTTCTGAAGATGACCTCCACACCATTGTTCAGATGGGGTTTGGCCAAACTGCAAATAGGAAAACACCAATACAATCTCAGAGTTTCAACGGCTCAAATCAAGTACCCCTATGA 1881 0.4226 MQHTQHNIIHHFFVTVSFMENHQFFLNAGVPPPQMHHFEPSPLPPPPQHHHHHHPWQQQSLSSSSSPSPMDVQVTVLNCSTQQDCFFNTTPTWNKSTDHHHGLQFDSSALSSMVSSPAASNSNMSSESFVIRELIGKLGNIGGGDASDEISPHSHSLVAAASSYINGNNNNSTNTSCYSTPLSSPPKINMNNKIPAMVKEGTLNSTVAEFSADPGFAERAAKFSCFGSRSFNGRTTQLGPNNAELTQRLVENGNHLPRVSSTPSLEVVVLGSHEEIKNKNKNNNSPPLQDLMEVANSQEESTISEQTPPNGVKKPSPYANSSSSSRKRKGPSKGKAKETSTSTNNPPMAAEASEDSNAKRSKKISECDDVNKNENENGQVKAEEESKEGNNTNTNSNGDGYDEKQNNKSNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHAIFQNDSSAPPFYGQHPQQNSEAIHSNIPNGTMTHTSVDPLETTELCQNLGMHLPHLNGFNIEGASQYPITFSEDDLHTIVQMGFGQTANRKTPIQSQSFNGSNQVPL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1686 626 PANTHER BHLH TRANSCRIPTION FACTOR 55 623 - -
Aed9g1686 626 MobiDBLite consensus disorder prediction 531 555 - -
Aed9g1686 626 Coils Coil 476 496 - -
Aed9g1686 626 MobiDBLite consensus disorder prediction 33 69 - -
Aed9g1686 626 MobiDBLite consensus disorder prediction 295 327 - -
Aed9g1686 626 Gene3D - 426 501 IPR036638 GO:0046983
Aed9g1686 626 CDD bHLH_AtBPE_like 419 504 - -
Aed9g1686 626 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 55 623 IPR024097 GO:0006355
Aed9g1686 626 MobiDBLite consensus disorder prediction 336 351 - -
Aed9g1686 626 MobiDBLite consensus disorder prediction 355 388 - -
Aed9g1686 626 MobiDBLite consensus disorder prediction 295 419 - -
Aed9g1686 626 Pfam Helix-loop-helix DNA-binding domain 433 480 IPR011598 GO:0046983
Aed9g1686 626 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 429 479 IPR011598 GO:0046983
Aed9g1686 626 MobiDBLite consensus disorder prediction 405 419 - -
Aed9g1686 626 MobiDBLite consensus disorder prediction 389 404 - -
Aed9g1686 626 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 427 498 IPR036638 GO:0046983
Aed9g1686 626 SMART finulus 435 485 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1686 Aed-Chr9 20367259 20371361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1686 19 578 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 41.446 2.32e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed9g1686 HLH 5.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1686 - - gmx:100812081 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1686 9 20367259 20371361 Aed2g1562 2 19352745 19356764 PCT