Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1682 ATGAAGGGAGTATCCTATCGAGGGAATCATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAGCCAGCTTGGATAACATCTAGACAAATAGAAGCGGGGCGGCGAGCAATGTCACGAAATGTTCGCCGCGGTGGACAAATATGGGTACGCATATTTCCGGACAAACCGGTTACAGTAAGACCTACTGAAACACGTATGGGTTCAGGAAAAGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCCGGGAAAATACTTTATGAAATGGCGGATAACAGCGGAGCACGCGAACTGATGTGTATTCGAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCGGTAATCAAACAAGCAGTACCAAATACGAACTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAACGGTATAATAATTCAGTATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATATTTTGTGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGCTATGTTTCCAAAAAGATTCAACATACTTTTTATAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGGACTTGTGGATTCAAGGGTACACGAAGGGGGACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAAAAGGTCCTGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGCACCACCATTCTCTGTCTCTCACAACATCATTCCAATGAACGCTTTCACAAGAAACAAGCGAGTCACTGACCCGTTCGACGACCAGGCCCGAGCCCGACTCGTCGGCGCCGATCAACGCCAACTCACTTCCACCACCCAACACTCCGGTGAATCCCTCTCCCTCTCTCATCTCGTCCAGAGCTTCCTCGAACAGGACACCACCAACGATGACTCTGACTCGCCAATTGACGACTCGGACTGGGACTGGGACCGAGTCGACTCAGTTGACGACTCACCCGACTCAGTCGACAACTCGCTCCCGACTCTCGCCGTCTCACTCTCCAGCAATGCGGACCCTTACAGGAACCTACTCATCACGCACGTCGCGGAGGCCTTGGAGAGCTTCACGTCTCTGAGGGAGCGAAACGCGTCGTCGCTTATCCGGCGGAGCGTGGCGGCGTTCCTTCGCGAGAGACTGCACGACGCGGCGGTTTGCGAGACCGCGCGGGACTCCTCCGGCGGGAGCCACGAGTTCATCGACGTGGTCCGGTCCGGATCCGCCACGTGGCGCTACTTCGTGGACCTGGACTTCCGCGCGCAGTTCGAGATCGCGCGCCCTACACGGCGGTTCTCGGAGGCGCTGGCCTCCGTCCCCGGCGTGTTCGTCGGAGGCGCGGACGAACTGAAACGCACCGTCTCGGCGGCGTGCGACGCGGCGAGGAGGTGTTTCAGGAGCAGGGGGCTTCCGGTTCCGCCGTGGAGGAAGAACCGGTTCATGCAGAGCAAGTGGTTCGGGCCGAGTCGCCGAACCGTCGCGAACAGTGTTTCGATGGGATTGAACGGCGTTAGTTGCAGGGTGGTGGGATTTGACGACGTGGTTTTGGAAGGTGGTGGCGGTGGTGTTGTTGTGCGTACCAGATGA 1743 0.5318 MKGVSYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGKILYEMADNSGARELMCIRILGASNRRYAYIGDIVVAVIKQAVPNTNLERSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEAMFPKRFNILFIDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIKGPGLGRDAALRAIRRSAPPFSVSHNIIPMNAFTRNKRVTDPFDDQARARLVGADQRQLTSTTQHSGESLSLSHLVQSFLEQDTTNDDSDSPIDDSDWDWDRVDSVDDSPDSVDNSLPTLAVSLSSNADPYRNLLITHVAEALESFTSLRERNASSLIRRSVAAFLRERLHDAAVCETARDSSGGSHEFIDVVRSGSATWRYFVDLDFRAQFEIARPTRRFSEALASVPGVFVGGADELKRTVSAACDAARRCFRSRGLPVPPWRKNRFMQSKWFGPSRRTVANSVSMGLNGVSCRVVGFDDVVLEGGGGGVVVRTR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1682 580 Hamap 30S ribosomal protein S11 [rpsK]. 134 312 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 Gene3D Ribosomal protein L14 76 201 IPR036853 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 Hamap 50S ribosomal protein L14 [rplN]. 80 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 Gene3D Ribosomal protein S11 204 303 IPR036967 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 SMART Ribosomal_L14_2 86 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 Pfam Ribosomal protein S11 211 293 IPR001971 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 Pfam PDDEXK-like family of unknown function 337 543 IPR006502 -
Aed9g1682 580 SUPERFAMILY Translational machinery components 209 280 - -
Aed9g1682 580 Pfam Ribosomal protein L14p/L23e 89 200 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 PANTHER DUF506 FAMILY PROTEIN 295 580 - -
Aed9g1682 580 Pfam Ribosomal protein L16p/L10e 1 97 IPR016180 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 MobiDBLite consensus disorder prediction 345 377 - -
Aed9g1682 580 ProSitePatterns Ribosomal protein L14 signature. 140 166 IPR019972 -
Aed9g1682 580 TIGRFAM rplN_bact: ribosomal protein uL14 89 200 IPR005745 GO:0003735|GO:0006412|GO:0015934
Aed9g1682 580 SUPERFAMILY Ribosomal protein L16p/L10e 1 92 IPR036920 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 CDD Ribosomal_L16_L10e 7 90 IPR016180 GO:0003735|GO:0005840|GO:0006412
Aed9g1682 580 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Aed9g1682 580 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Aed9g1682 580 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Aed9g1682 580 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Aed9g1682 580 PANTHER OS03G0796600 PROTEIN 295 580 IPR006502 -
Aed9g1682 580 TIGRFAM rplP_bact: ribosomal protein uL16 1 92 IPR000114 GO:0003735|GO:0006412|GO:0019843
Aed9g1682 580 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 422 544 IPR006502 -
Aed9g1682 580 SUPERFAMILY Ribosomal protein L14 90 200 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1682 Aed-Chr9 20305728 20311907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1682 91 189 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 35.922 6.05e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1682 - K02874 gmx:100814756 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1682 9 20305728 20311907 Aed2g1569 2 19563243 19564148 PCT