Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1679 ATGGCGAAGCCAGGGGTGTTGGAGTCTGATCCAGGTGTGATGGTGAAGAAGGCCATAGAGTTGAAGAGGGAGCTTCAGAGGTTGGTGATGTCCATTGTAGATGATGAAGATTGCAGCACTGAAACCATTGATCAGGCAAAAGAGACTCTCTCTGTTCTCAAGGAGTTGAACCTCAGAAAAAGGTCTTCACTGTCTCTGAAGCTACACAACAAGAGTGTCAATTCTTCTTGTCCTGATGAATTCAAGTGTCCTCTTTCCAAGGATTTGATGAAAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAAATGGCTAAATGCTGGAAACAGGACATGCCCAAGGACACACCAAGTACTTTCACACACTGTTCTTACACCAAACCATCTAATAAGGGAAATGATAGAGCAATGGTCTAAAAACCAAGGCATTGAACTGTCAAATAGTGTTCAGTACATTGATGATGAAGGTTTAACCGAACCCGACCGTGAGCATTTTCTTTGTCTGATCAAGAAAATGTCATCAACACTTCCTGATCAGAAGGCTGCTGCAAAAGAACTGCGGTTGTTGACAAAGAAGCATCCATGTTTCCGAGTACTTTTCTGTGATTCTGCAGATGCCATTCCCCAACTGCTTAAGCCAATCTGTGGAGGTGATTCTTTTGGAAGTGTCCACCCTGATCTCCAAGAGGATGTGATCACAACACTCCTCAACATCTCAATTCATGACAACAACAAAAGACTAGTAGCTGAAACACCAATGGTAGTTCCTCTCCTCATGAGAGCACTGAGATCCGGAACAATAGAAACAAGAAGCAATGCTGCAGCCGCGCTCTTCACTCTCTCGGCTCTCGACTCAAACAAGGAACTCATAGGGAAATCCGGAGCCTTGAAGCCCTTAATCGACCTCTTGGAGGAAGGCAATCCCTCAGCCATGAAGGATGTCGCCTCAGCAATCTTCAACATATGTGTAATGCATGAGAACAAGGCAAGAGCCGTGAAGGATGGCGCGGTGAGGGTGATTTTGACAAAGATAAAGAAGAATATTCATGTTGATGAGTTACTAGCCATCCTTGCATTGCTTTCAAGTCACCAGAGGGCTGTCCATGACATGGGGGATCTCGGAGCCGTTCCTAGCCTTCTAAGGATCATCAGAGAGAGCTCGTGCGAACGAAACAAGGAGAATTGTGTGGCGATCCTGCAAACTATTTGTCTGTATGATAGATCAAAGTTGAAGGACATGAGAGAAGAGGAGAACAGCCACAAGACAATATCTGAGCTAGCACAGAATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGACTCAACAAGGTTGTTAATATCACACACACTGCATAA 1386 0.4459 MAKPGVLESDPGVMVKKAIELKRELQRLVMSIVDDEDCSTETIDQAKETLSVLKELNLRKRSSLSLKLHNKSVNSSCPDEFKCPLSKDLMKDPVIVASGQTYDRPFIQKWLNAGNRTCPRTHQVLSHTVLTPNHLIREMIEQWSKNQGIELSNSVQYIDDEGLTEPDREHFLCLIKKMSSTLPDQKAAAKELRLLTKKHPCFRVLFCDSADAIPQLLKPICGGDSFGSVHPDLQEDVITTLLNISIHDNNKRLVAETPMVVPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGNPSAMKDVASAIFNICVMHENKARAVKDGAVRVILTKIKKNIHVDELLAILALLSSHQRAVHDMGDLGAVPSLLRIIRESSCERNKENCVAILQTICLYDRSKLKDMREEENSHKTISELAQNGTSRAKRKASGILERLNKVVNITHTA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1679 461 CDD RING-Ubox_PUB 81 123 IPR045210 -
Aed9g1679 461 Pfam U-box domain 78 147 IPR003613 GO:0004842|GO:0016567
Aed9g1679 461 Gene3D - 358 458 IPR011989 -
Aed9g1679 461 SUPERFAMILY RING/U-box 72 151 - -
Aed9g1679 461 SUPERFAMILY ARM repeat 180 451 IPR016024 -
Aed9g1679 461 SMART arm_5 247 288 IPR000225 GO:0005515
Aed9g1679 461 SMART arm_5 197 246 IPR000225 GO:0005515
Aed9g1679 461 SMART arm_5 368 410 IPR000225 GO:0005515
Aed9g1679 461 SMART arm_5 289 329 IPR000225 GO:0005515
Aed9g1679 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 342 IPR000225 GO:0005515
Aed9g1679 461 ProSiteProfiles U-box domain profile. 76 150 IPR003613 GO:0004842|GO:0016567
Aed9g1679 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 157 IPR013083 -
Aed9g1679 461 PANTHER U BOX DOMAIN-CONTAINING 5 459 - -
Aed9g1679 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 459 - -
Aed9g1679 461 SMART Ubox_2 80 143 IPR003613 GO:0004842|GO:0016567
Aed9g1679 461 Pfam Armadillo/beta-catenin-like repeat 291 328 IPR000225 GO:0005515
Aed9g1679 461 Gene3D - 209 357 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1679 Aed-Chr9 20272195 20275586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1679 139 461 U-box Gene Family AT3G07360 60.241 5.17e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1679 - - gmx:100809408 817.379