Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1678 ATGGGTCGAAACGTGGATTACTCGTCGTTTCTGGCAAAACAAGCGGAGCAACTACGAATAGACGGCAACAACTGCTTCAAAAAAGACCGTTTTGGAGCTGCCATCGATGCTTACACCGAGGTTTTTACTTCCACTTCTTCTCACGGTGTCGTTTTGTTTCCAACGAACATCGATGTTTGTTTTGTTTTCGTTTTCTCATTGGTGGTTTTCAAGGCAATTACGCTGCGTCCAGATGTTCCGGTATATTGGACCAACCGTGCTCTCTGCCACCTCAAGCGCAATGACTGGATCAGAGTAGAGGAAGACTGTCGTCAAGCTATTAAGCTTGACAACAATTTGGTTAAGGCCCACTACATGTTAGGTCTTGCATTGGCACAGAGACAAGATTTTGCTAAAGGAATCTTAGAATTGGAGAAGGCTTTGGATCTGGATAGAGGTGCCCATCCTAAGGGCCAAATGACAGAGGAAATATGGCAAGAGCTTGCAAAAGCAAAATACTTGGAGTGGGAACATTCATATACTAAGCGATCATGGGAACTGCAGAACTTGAAAGAAGCTTGTGAGTATGCTCTAAAGGAAAAACATTTTCTTGAATTCTCTCACATGGAAGGATTCCAAGAAGATGATACTAACCATTTGGAACAATTAAATGCTTTAGGAAGAGTGTTTAATAAAGTTGGAGAAGATGACATGCCTACTGAGGTGCCTGATTATCTATGTTGTAGAATCACATTTGATATCTTTTTTGATCCTGTCATTACCCCAAGTGGACTTACATATGAGAGGACAGTGATTCTTGACCATCTTGAGAAGGTGGGAAAATTTGATCCAGTCACCCGGAAACCTCTTGATCCATCACAACTGATACCTAATTTAGCCATAAAGGAAGCAGTTCAAGCATTTTTGGATAAACATGGATGGGCATACAAAGATATATTGGAAAAAGGTTATTAA 954 0.4109 MGRNVDYSSFLAKQAEQLRIDGNNCFKKDRFGAAIDAYTEVFTSTSSHGVVLFPTNIDVCFVFVFSLVVFKAITLRPDVPVYWTNRALCHLKRNDWIRVEEDCRQAIKLDNNLVKAHYMLGLALAQRQDFAKGILELEKALDLDRGAHPKGQMTEEIWQELAKAKYLEWEHSYTKRSWELQNLKEACEYALKEKHFLEFSHMEGFQEDDTNHLEQLNALGRVFNKVGEDDMPTEVPDYLCCRITFDIFFDPVITPSGLTYERTVILDHLEKVGKFDPVTRKPLDPSQLIPNLAIKEAVQAFLDKHGWAYKDILEKGY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1678 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 71 311 IPR045200 GO:0000209|GO:0061630
Aed9g1678 317 PANTHER CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN-RELATED 71 311 - -
Aed9g1678 317 SUPERFAMILY RING/U-box 228 312 - -
Aed9g1678 317 SUPERFAMILY TPR-like 13 164 IPR011990 GO:0005515
Aed9g1678 317 CDD RING-Ubox_CHIP 235 301 IPR045202 -
Aed9g1678 317 PANTHER CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN-RELATED 11 47 - -
Aed9g1678 317 SMART tpr_5 80 113 IPR019734 GO:0005515
Aed9g1678 317 SMART tpr_5 15 48 IPR019734 GO:0005515
Aed9g1678 317 SMART tpr_5 114 147 IPR019734 GO:0005515
Aed9g1678 317 Pfam U-box domain 235 307 IPR003613 GO:0004842|GO:0016567
Aed9g1678 317 ProSiteProfiles U-box domain profile. 234 308 IPR003613 GO:0004842|GO:0016567
Aed9g1678 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 311 IPR013083 -
Aed9g1678 317 Gene3D Tetratricopeptide repeat domain 11 198 IPR011990 GO:0005515
Aed9g1678 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 11 47 IPR045200 GO:0000209|GO:0061630
Aed9g1678 317 SMART Ubox_2 238 301 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1678 Aed-Chr9 20264829 20268749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1678 8 310 U-box Gene Family AT3G07370 57.237 4.73e-126 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1678 K09561 - gmx:100796519 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1678 9 20264829 20268749 Aed2g1576 2 19843626 19849236 PCT