Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1645 ATGGGTCTATTGGGTTTGGGTCAATTTTCATGCATGCCGATGGCAAAGATTTGTACCATTGGGGCTGTTGGGGAAGGCTTGGCCACCCCTCTAGTGTTGGTTATAAGTAGCCGCATGATGAATAACATTGGTGGCTCCTCTTCCATGGATGCAAACACTTTCATCCATAACATCAATAAGAATGCAGTGGCTTGGTTATATTTGGCTGGTGCCTCTTTTGCGGTTTGCTTCCTTGAGGGTTTTTGTTGGACAAGAACGAGCGAAAGACAAGCAGTCAGAATGAGATGCAGGTATCTGAAAGCAGTGCTCAGACAAGATGTGGCTTATTTCGATCTGCATGTCACAAGCACGTCGGAGATTATCACCAGCGTCTCCAGCGACAGCCTCGTGATCCAAGATGTTCTCAGCGAAAAAGTGCCGAATTTCTTGATGAACATTTCTTTGTTCCTTGGGAGCTACATAGCCGCGTTTGCAATGCTGTGGAGGCTGGCCATCGTCGGGTTTCCGTTCGTGGTTCTTCTGGTGATCCCGGGCTTGATCTACGGCAAGACTCTGATGGGACTGTGTAGTAAAATCCGGGAGGAGTATAACCAAGCCGGGGCGGTGGCGGAACAAACTGTTTCGTCCATCAGAATCGTTTATTCGTTCGTGGGGGAGAGCAAGACCATGAGCGCTTTCTCAAACGCGCTTCAAGGGACGGTTAAGCTTGGCCTGAAACAAGGCTGGGCTAAGGGATTGGCCATTGGAAGCAACGGCGTCGTTTTCGGCATTTGGTCCTTCATGTGCTATTACGGTAGCAGACTCGTCATTTATCATGGCGCCAAAGGTGGGACGGTTTTCGCCGTCGGAGCAGCCATCGCGGTTGGTGGATTAGCATTAGGGGCGGGTTTATCCAACATGAAGTACTTCATGGAGGCGGGGGCGGCGGCGGAGCGTATAAAGGAAGTGATAAAGAGGGTTCCCAAGATAGATTCCGAGAGCATCGACGGCGAAATCCCAGAGACAGTCCACGGGGAAGTGGAATTTGACAGAGTGAAATTCGCATACCCATCGAGACCGGAGAGCGCAATTCTAAATGGTCTGAGCCTGAAGATTGCCGCGGGAAAGAGGGTGGCACTGGTGGGGGAAAGTGGGTCTGGGAAATCGACACTGATAGCACTGCTGCAGAGGTTCTACGACCCTTCCGGGGGAGAGGTACGGTTGGACGGAGTGGGGATCCAGAGACTGCAGGTGAAGTGGGTTCGGTCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCTCTGTTCGCGACCAGCATTAAAGAAAACATACTTTTCGGCAAAGAAGATGCCACGGAAGAGCAGGTGATTGAGGCCGCAAAAGCTGCCCATGCTCATAACTTCATCCAGCTTCTGCCTCAAGGTTACCATACACAGGTGGGGGAGAGGGGGATTCAGATGTCAGGGGGACAAAAACAGAGGATAGCAATTGCGAGGGCAATAATTAAGAAACCGCGAATCCTCCTTCTGGACGAAGCAACAAGCGCCCTCGACTCAGAGTCAGAGCGACTCGTCCAAGAAGCATTGGACAACGCCACCGCGGGCTGCACCACCATCATCGTCGCGCACCGCCTATCCACCATCCAGAACGCCGACCTCATCGCCGTTGTTGGAGGCGGAAGAATCGTCGAAATGGGCTCGCATGACGAGCTCATCCGAAACGACACCGGCGCCTACGCGTCGGCCTTCCACCTCCAGCAACAACAGAAGGTGAAAGAAAGCACAACAACAAAGACCGTTACTCTAGAGAGTAGTGCTTCCTGCACTACATCAATCACCATCGAAAATAACGTGAGGTCCACTCAGGTAGGCCCCACGATATTCGGTGACGGTGATGATGAAAATAACATTGGAGAGAAAAATATAATGAAGGTACATGCGCCGCCGTCGTTTAGGAGGCTGGTGGCGTTGAGTTTGCCGGAGTGGAAGCACGTCCTGTTAGGGTGCTGGAACGCGATGGTGTTCGGCGCGGTTCAGCCGGTGTACGCCTTCACGATGGGGTCGACGATACTGTTGTATTTTCATGCGGATCACGAGGAGATAGAGAGGCGAACGAAGTTCTACTCGTTCGCCTTTCTGGGACTTTTCGTGGTGTCTCTGCTGGCGAATATTGGGCAGCATTATTGCTTCGGGTACATGGGGGAATACTTGACGAAACGGGTCAGAGAGACAATGCTTGCAAAAATCCTCACTTTCGAAGTTGGGTGGTTCGATTTGGAACAGAACTCCAGTGCCGCCATCTGCTCCAGACTTGCCAAGGATGCTGATGTGGTGAGGTCTCTAGTGGGAGATAGAATGGCATTGCTAGTACAAACATTTTCAGCGGTGATAACAGCCTACACGATGGGCCTAATCATTTCCTGGAGGCTTTCAATTGTTATGATCGCCGTACAACCCATCATCATAGCGTGCTTCTACACAAGGCGTGTTCTTCTCAAGAGCATGTCCCACAAGGCCCTCAAGGCCCAGCAGAAAAGCAGCAGCATAGCTTCCGAAGCGGTTTCGAATGTTAGGACCGTAACGTCCTTTTCTTCCCAGGCCCGGATCCTCAGGCTGCTCGAAGAGGCCCAGGAGGGCCCTAGCCGCGAGAATGTCCGGCAATCATGGTTTGCCGGCATTGGACTCGGGTGCTCCCAGGGCCTCGCGTCCTGCATCTGGGCCTTGGACTTTTGGTACGGCGGTAAGCTGATCTACGGTGGGTACATAACCGTCAAAACTTTTTTCGAGAGCTTCATGGTTTTGGTGAGCACGGGGAGGATCATCGCCGACGCGGGAAGCATGACCACGGATCTCGCAAGAGGTGCTGATGTTGTTGGTGATGTTTTCGGGATCATAGACAGGTGCACGGAAATTGAACCCGATGACCCGAATGGGTACAAGGCAGAGAGTTTAGTTGGTGACATAGAGTTTCATGAAGTGCATTTTGCGTACCCCACTAGGCCTAATGTGGCTATCTTCTCAGGTTTCTCTATTAATATTAAGTCAGGTCAATCAACAGCATTGGTGGGGCAGAGTGGGTCAGGGAAATCGACCATCATAGGGCTAATAGAGAGATTTTATGATCCACTTCAGGGGATGGTGACAATAGATGGCATGGACATAAAACGTTACAACCTAAAGTCACTAAGGAAGCACATAGCACTAGTGAGCCAAGAGCCAACGTTGTTCGGTGGGACCATAAGGGAGAACATTGCATACGGAACTGCAACATGCGATGGTGATGATGCCGACGAGAGTGAGATTATAGCGGCGGCGAGAGCGGCGAACGCTCACGATTTCATAGCGGGCATGAAGGATGGTTACGAGACATTGTGTGGGGAAAAGGGGGTGCAGCTTTCGGGGGGTCAGAAGCAGAGGATAGCAATAGCGAGGGCAATATTGAGAAATCCAAAGGTGTTGCTGTTGGACGAGGCTACGAGTGCGTTGGATGGTCAAACGGAGAAGGTGGTGCAGGAAACGTTGATGAGGGTGATGGCTGGGAGGACCAGCGTGGTGGTGGCGCATAGGTTGAGCACCATTCACAATTGTGATGTTGTTGCTGTGTTGGAAAAGGGGAGGGTGGTGGAGATTGGAACCCACTCGTCTTTGTTGGCCAAAGGAGCATCGTGTGGTGGAGCTTATTACTCCTTGGTCACTCTTCAGACCAGACATGCACCAGCTGCTAACACCAAATCATAA 3714 0.5167 MGLLGLGQFSCMPMAKICTIGAVGEGLATPLVLVISSRMMNNIGGSSSMDANTFIHNINKNAVAWLYLAGASFAVCFLEGFCWTRTSERQAVRMRCRYLKAVLRQDVAYFDLHVTSTSEIITSVSSDSLVIQDVLSEKVPNFLMNISLFLGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGKTLMGLCSKIREEYNQAGAVAEQTVSSIRIVYSFVGESKTMSAFSNALQGTVKLGLKQGWAKGLAIGSNGVVFGIWSFMCYYGSRLVIYHGAKGGTVFAVGAAIAVGGLALGAGLSNMKYFMEAGAAAERIKEVIKRVPKIDSESIDGEIPETVHGEVEFDRVKFAYPSRPESAILNGLSLKIAAGKRVALVGESGSGKSTLIALLQRFYDPSGGEVRLDGVGIQRLQVKWVRSQMGLVSQEPALFATSIKENILFGKEDATEEQVIEAAKAAHAHNFIQLLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERLVQEALDNATAGCTTIIVAHRLSTIQNADLIAVVGGGRIVEMGSHDELIRNDTGAYASAFHLQQQQKVKESTTTKTVTLESSASCTTSITIENNVRSTQVGPTIFGDGDDENNIGEKNIMKVHAPPSFRRLVALSLPEWKHVLLGCWNAMVFGAVQPVYAFTMGSTILLYFHADHEEIERRTKFYSFAFLGLFVVSLLANIGQHYCFGYMGEYLTKRVRETMLAKILTFEVGWFDLEQNSSAAICSRLAKDADVVRSLVGDRMALLVQTFSAVITAYTMGLIISWRLSIVMIAVQPIIIACFYTRRVLLKSMSHKALKAQQKSSSIASEAVSNVRTVTSFSSQARILRLLEEAQEGPSRENVRQSWFAGIGLGCSQGLASCIWALDFWYGGKLIYGGYITVKTFFESFMVLVSTGRIIADAGSMTTDLARGADVVGDVFGIIDRCTEIEPDDPNGYKAESLVGDIEFHEVHFAYPTRPNVAIFSGFSINIKSGQSTALVGQSGSGKSTIIGLIERFYDPLQGMVTIDGMDIKRYNLKSLRKHIALVSQEPTLFGGTIRENIAYGTATCDGDDADESEIIAAARAANAHDFIAGMKDGYETLCGEKGVQLSGGQKQRIAIARAILRNPKVLLLDEATSALDGQTEKVVQETLMRVMAGRTSVVVAHRLSTIHNCDVVAVLEKGRVVEIGTHSSLLAKGASCGGAYYSLVTLQTRHAPAANTKS 1237
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1645 1237 Gene3D ABC transporter type 1, transmembrane domain 625 983 IPR036640 GO:0005524|GO:0016021
Aed9g1645 1237 ProSitePatterns ABC transporters family signature. 1124 1138 IPR017871 GO:0005524
Aed9g1645 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 17 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g1645 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1226 IPR027417 -
Aed9g1645 1237 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 1230 IPR039421 -
Aed9g1645 1237 SMART AAA_5 1007 1206 IPR003593 -
Aed9g1645 1237 SMART AAA_5 367 561 IPR003593 -
Aed9g1645 1237 CDD ABC_6TM_Pgp_ABCB1_D1_like 17 313 - -
Aed9g1645 1237 CDD ABC_MTABC3_MDL1_MDL2 980 1226 - -
Aed9g1645 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 980 1221 IPR003439 GO:0005524
Aed9g1645 1237 Pfam ABC transporter 1000 1152 IPR003439 GO:0005524
Aed9g1645 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 664 945 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g1645 1237 Pfam ABC transporter 358 507 IPR003439 GO:0005524
Aed9g1645 1237 CDD ABC_6TM_Pgp_ABCB1_D2_like 648 963 - -
Aed9g1645 1237 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 16 1230 - -
Aed9g1645 1237 Pfam ABC transporter transmembrane region 17 282 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g1645 1237 Pfam ABC transporter transmembrane region 664 928 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed9g1645 1237 Gene3D - 984 1230 IPR027417 -
Aed9g1645 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 578 IPR027417 -
Aed9g1645 1237 Gene3D - 330 579 IPR027417 -
Aed9g1645 1237 SUPERFAMILY ABC transporter transmembrane region 17 324 IPR036640 GO:0005524|GO:0016021
Aed9g1645 1237 SUPERFAMILY ABC transporter transmembrane region 641 965 IPR036640 GO:0005524|GO:0016021
Aed9g1645 1237 CDD ABC_MTABC3_MDL1_MDL2 340 578 - -
Aed9g1645 1237 Gene3D ABC transporter type 1, transmembrane domain 17 603 IPR036640 GO:0005524|GO:0016021
Aed9g1645 1237 ProSitePatterns ABC transporters family signature. 479 493 IPR017871 GO:0005524
Aed9g1645 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 340 576 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed9g1645 Aed-Chr9 19887901 19895082 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1645 17 1226 Calmodulin-binding Proteins AT2G36910 43.893 0.0 979
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1645 K05658 - gmx:100809399 1936.38