Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1619 ATGTATAGAGTGGTTCCCGTTGCTGGCAGAACCCGAAGCAAGCGGGGAATGGTGGATGGAAGTGGTTTACCAATGGGTCAGAAGAAGAAGAACAAAAGGGTGCATGGCCCTGAAAAAGTGATTGTCTTGGAAGATGATGAAGTTGCAAATGTGAGAGTTGAACCTGGCTCTGGTGGTGCTTCTTCTTCTTCATCATCATCTGGTGCTCGTGCTTTGAACCCTGAAAATGAAAGGGTATCTGAGCGTTTTGGAGGGCATGCAGATGACCCTATTGAAATCTGTGACAGTGATGATGATGATGATGATGAAGGGTTGAGGGATTCTGTGTCTGTTGATAATAAAGTTGAGAACTTTGACAATGATGATGACTATGGTCTTGTTCCTGAAAAGCCTATTGTGCTGAAGTTTGATTATTCAGATGGGGAAAGAGGGAGTGAGAAGGAGCATACTGAGAGTGGTTCAAGCGATGATGAATGTGATTCTCTTTTGTCTTTAACTGAGAGTGAGGATGATGATGTGAGTACTAGTGATGAAGATTTTCGAGTTGATGATGATGGGGTTGAGAATGCTTACTACTCGAGCAGTGATGACAGTGATTCATCTGCTTGTGATGATAAGAGGGTGAGAAAGGTGGCGAGTGAAACTGAAAACAGTGGTGCTGTTTGCAAAAGAAAAGGTGGAATGAAAGATAGTGAGAAAGTAGAGAAATGGATTGGTGCTAATTGTACTAGTGCTATCACTAGTAGATTTGTAATTTATGAGGAGGAAGCAAGAGATGCAGCACAGAAACATGAAGTAAAGAGGCTGAAAAGTGTCAATGCTGATGCAGAAGGAGTCTTTGGTGGTCTCTGGGAAAATGCAGGTTGCTCTATGCATTCTGAAGAGCATAGGAAGAAAAGAGATAGAGGCCATCAAATTGTGTCATTGCAGAATGAGACAGGGGATTCAACTGTGATCAAGAAGGGTGAGAAAAGTTACAATGCCAATGCCAATGACAATGACTCTGTGATTCTTGATGAGAATGAAGGAGAAGAGCATTGTCCTATCGAAGGAACGAGTGCAAGGGGTGTTTCTTTTTTGCCAAAAAGCCAAGAGAAGATTGGAGCTGATTCTGCTAAAGTTGTAATGAAAAAAAAAGACAGAAAGGGAAGGATTCATAGATACGGGTTTAGTAGCAATAAACGTGAGAAAAATGAGCTGTATGAAGTCCTAAGGATGCCATCTAGAACAAAAGATCAATATTTTGATTTTTTCACTGAATGCTTTTGGGGCAAGAATGGTTCTGTTAAAGATGATTCAAATCAGTTGGAAGAAAAGCATGATGATGTTGATCTGGGTCAGACTCAGCCATTAGCACCTATTGAGACAGTCCCTCTGAATGGGAACTTTTTGAAGAAAGAACCTATTGAAAAATCGGAGTTTGAGAAGGAGTTAGATATCTTGTGGGGTGAAATGGATTTGCTCCTTCAAGTTGAAGAAATTGGGTCACAGATTGATAATGCAGGGACAGTTGAAGCAAGAGAAAATGAAGAAAATCCAGTCCCGCAGTGCAAGCATGACAATGTTTTTAATGAGGAGATTGGGATATACTGCAGTTGGTGTGGTTGGATTGCCACTGAAATCAAATATATCACACCACCATTTGTAGATTCTGAAAGATACAGTAGAGAGGCGTTATCTAGTGGAGGGAAAACCACACAATTTGATGAGGGTCTGTTTAATGATTCTGGTGATGACTCAAATGCAGTTTGGTCTCACAACGAAGGCTCAGTTTGGGATCTTATTCCTGACATAAAAGAAAGCTTGTATCCTCACCAACAGGAAGGGTTCGAGTTTATTTGGACAACTTTGGCAGGAACCACTGACCTTGCCAAGTTGAAGAGGGTTGACCCGCATAGTGAAGGTGGATGTATTATTTCTCATGCTCCTGGAACCGGTAAGACAAGGCTGACCATGGTCTTTCTTCAGACATATTTGCGATTGTTTCCCAAGTGTCTACCTATTATCATTGCTCCAGCAAATATATTGCTTACTTGGGAAGATGAGTTAAGGAAGTGGAACATAGGAATTCCCTTTCACAACTTGAACAATGGTGAATTATCCGGAAATGAGAAGGATTTTAACGAAGTTGAATGGTCTGGCAATCAAAGGCAGAATAAGGACGCCATCCGAATGGTGAAGCTGTGTTCATGGTACAAAGAGACGAGCATTCTGCTAATCAGCTACCATTTGTACGAGAAGCTAGCCAGGGGGATGTCTGAAGGTGGTGATGGGGAAAAGGAGAACAAAAATAGAAAGATGAAAAAAGAGAAGAAACGTAGCAAGTGCATTGAAACTGCTATGGGAAAGGTTTTGCGTGACTATCCCGGTTTGCTAATTCTTGATGAAGGGCACACGCCACGGAATCAGCGTAGCTATATTTGGAAGGTTATCTCAGAAAGTAGATCTCAGAAGCGAGTCCTTCTTTCGGGGACTCCTTTCCAGAACAACTTTCTGGAACTCTACAACATTTTGTCCTTAATGAAGCCATCCTTTCAAGACAGCATAACACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAAGGCAGGAAAGGAAAGCTTCAAAAGAAGTGAGTTGGGAACCCGTTTCTTCTGCAAATCATGCTGGTGAGAAAATAAACCAGCTAAAGTTGATGATGAATCCCTTTGTACATGTTCACAAAGGTAGCATTCTGCAGAAGAACCTTCTTGGTTTGAGAGATTGTGTGCTGTTTTTGAAGCCAGACAGTTTGCAGCAAGAAACTCTGGACAGTATTGATTGTTCTCAAAATGTACTAAACTTTGAACACAAATTGGCATTGGTGTCGGTCCATCCATCCCTTTTCCTAGACTGCTCTCTGTCAGAAAAAGAAGAATCTGTTCTCAACAAGGATCAGTTGGAAAAGCTTAGATTGAACCCTTATGGAGGGGTAAAAACCAAGTTTTTGTTGGAGCTTGTGAGACTCTGTGATGCGATCAACGAGAAAGTCCTTGTTTTCAGCCAATTTATCGATACCTTATGCTTAGTCAAGGACCAACTTGAGTCGGCCTTTAATTGGTCTGTGGGCACTGAAGTGTTGTATATGAATGGCAAACTAGACCAAAAGCAAAAACAATCCCTCATTCACAGTTTCAATGATACAAATAGCCAAGCAAAGGTGTTGCTTGCTTCAATCAAAGCATCTTCTGAAGGCATTAACTTAACTGGAGCGTCGAGGGTCGTCCTTCTCGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTCCCGAGCATACAGACTTGGACAAAAGAAGGTTGTTTACACTTATCATCTTCTTGCACAAGGCACCCCTGAATGCAACAAATACTGTAAGCAAGCAGAAAAGGACCGGTTATCCGAACTGGTTTTCTCCAATAAAAATGCCAAGAGTGATAAGCTGAACAGTTCTGGAGTAGTGCTTGAGGATGCAGTTCTTGATCTCATGGTTCAGCATGAAAAACTTAAGGATATGTTTGGTGAGCTTCTGGTTCAACCAAAGGAGAGAGATTTGGAGAATTTGGGCCCTTGA 3573 0.4162 MYRVVPVAGRTRSKRGMVDGSGLPMGQKKKNKRVHGPEKVIVLEDDEVANVRVEPGSGGASSSSSSSGARALNPENERVSERFGGHADDPIEICDSDDDDDDEGLRDSVSVDNKVENFDNDDDYGLVPEKPIVLKFDYSDGERGSEKEHTESGSSDDECDSLLSLTESEDDDVSTSDEDFRVDDDGVENAYYSSSDDSDSSACDDKRVRKVASETENSGAVCKRKGGMKDSEKVEKWIGANCTSAITSRFVIYEEEARDAAQKHEVKRLKSVNADAEGVFGGLWENAGCSMHSEEHRKKRDRGHQIVSLQNETGDSTVIKKGEKSYNANANDNDSVILDENEGEEHCPIEGTSARGVSFLPKSQEKIGADSAKVVMKKKDRKGRIHRYGFSSNKREKNELYEVLRMPSRTKDQYFDFFTECFWGKNGSVKDDSNQLEEKHDDVDLGQTQPLAPIETVPLNGNFLKKEPIEKSEFEKELDILWGEMDLLLQVEEIGSQIDNAGTVEARENEENPVPQCKHDNVFNEEIGIYCSWCGWIATEIKYITPPFVDSERYSREALSSGGKTTQFDEGLFNDSGDDSNAVWSHNEGSVWDLIPDIKESLYPHQQEGFEFIWTTLAGTTDLAKLKRVDPHSEGGCIISHAPGTGKTRLTMVFLQTYLRLFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNGELSGNEKDFNEVEWSGNQRQNKDAIRMVKLCSWYKETSILLISYHLYEKLARGMSEGGDGEKENKNRKMKKEKKRSKCIETAMGKVLRDYPGLLILDEGHTPRNQRSYIWKVISESRSQKRVLLSGTPFQNNFLELYNILSLMKPSFQDSITQELKKFCQSRLRQERKASKEVSWEPVSSANHAGEKINQLKLMMNPFVHVHKGSILQKNLLGLRDCVLFLKPDSLQQETLDSIDCSQNVLNFEHKLALVSVHPSLFLDCSLSEKEESVLNKDQLEKLRLNPYGGVKTKFLLELVRLCDAINEKVLVFSQFIDTLCLVKDQLESAFNWSVGTEVLYMNGKLDQKQKQSLIHSFNDTNSQAKVLLASIKASSEGINLTGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLLAQGTPECNKYCKQAEKDRLSELVFSNKNAKSDKLNSSGVVLEDAVLDLMVQHEKLKDMFGELLVQPKERDLENLGP 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1619 1190 Gene3D - 912 1182 IPR027417 -
Aed9g1619 1190 MobiDBLite consensus disorder prediction 162 184 - -
Aed9g1619 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 1150 IPR027417 -
Aed9g1619 1190 MobiDBLite consensus disorder prediction 1 207 - -
Aed9g1619 1190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 844 IPR014001 -
Aed9g1619 1190 MobiDBLite consensus disorder prediction 75 91 - -
Aed9g1619 1190 Gene3D - 579 893 IPR038718 -
Aed9g1619 1190 MobiDBLite consensus disorder prediction 92 106 - -
Aed9g1619 1190 MobiDBLite consensus disorder prediction 135 156 - -
Aed9g1619 1190 MobiDBLite consensus disorder prediction 107 128 - -
Aed9g1619 1190 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 1187 IPR044567 GO:0080188
Aed9g1619 1190 MobiDBLite consensus disorder prediction 36 51 - -
Aed9g1619 1190 CDD SF2_C_SNF 985 1114 - -
Aed9g1619 1190 MobiDBLite consensus disorder prediction 56 73 - -
Aed9g1619 1190 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 991 1149 IPR001650 -
Aed9g1619 1190 MobiDBLite consensus disorder prediction 753 773 - -
Aed9g1619 1190 SMART helicmild6 1018 1103 IPR001650 -
Aed9g1619 1190 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 1187 - -
Aed9g1619 1190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 864 IPR027417 -
Aed9g1619 1190 SMART ultradead3 598 852 IPR014001 -
Aed9g1619 1190 Pfam Helicase conserved C-terminal domain 988 1103 IPR001650 -
Aed9g1619 1190 Pfam SNF2-related domain 621 930 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1619 Aed-Chr9 19487287 19491465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1619 1001 1148 RAD5 or RAD16-like Gene Family AT5G43530 38.514 1.57e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed9g1619 SNF2_N 2e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1619 K10875 - gmx:100806733 1499.18