Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1618 ATGGATAAGCGGGTTTCTGTTGCGGGAAGGACACGGAGCAAGGGGTTCACGGTTTTGAGTGGTTTGGAGATGGGACGGAAGAGGAGGAGAAGAGTGAACGATGATGATGATGATGTTATTTGTTTGGGAGACAATGCAAGTGCGAGTGCGAAACCGGGTTCAATGGAGATGGGGTTTGAGTTTTTGGGAGAGAGTGAGGAGGCTCCTGCGGAGGTGTTTGAAATTGGAGACAGTGATGATGGTGAAGAGATGGTTGAGGTTAAGAAGGAAGAGAAGGCTGAAGAAAAAGTTGAGAGCTTTGCTGCTGCTGCTGTTGATGATGATGATGATCAGTGTGGCTCTCGACCTGGGAACCCTGTTATTTTCACGCATTTGTCGTCTTCATCGAAGAGCGATGATGGTGATGATGATGAGACGAGTGATGATGATTTCAGGGTTGATGGTGTTGATGATGATGATAGGGCTGAGGCTGATAGTGAATGCTCAAGCACCGAGGAGGAGGAGAGTGATGGTGATTCTTCTTCTAGTGATGATGAGAGAAGGGGATACCGGAGGTTTGTGAAGGAGAGGGTGAGTGAATCTTGGAGCAGTGGAGTTTGCAGAAGGAAAGGCAAAAGGAAAGAGACTGTGGAGGTAGATGATGATGATGATGATGAGGAAGAGGAGGAGGAGAAATGGAATGGTGCTGATTGTGCTAGTGTGACATCTAGTAAATCAGATGTTTGTAAGAAGGGAATAAAGAAGGCAGAAGAAGAGAAACATGCAGCAAAGAGAGCAGAGAGTGTCATCAATGCTGAACTCTTTGTTGGCATGTCATCTAGCAAATGTAGGGAGGAAACAAAGAAGGCTGAAGAGAATCATCATGCAGCAAAGAGAGCAGAAAGTGTGAATGCTAGGGAGACAGTAGTCTCTTTGACTAGCAGCTGTAAGAAGAAGAAACCTGTTGAACAAGAGACTGACAAGGAGATTATGAACATGTTGTGGGAAGAATTTGACATTGCTCTTCAAGAAGCCGAGACAAGAGATGATGATTCGACTATGACAGCGATGATGAAGTGGCGTGTGAAAGAAGATCGTGCCAATGCCAATGGTTGTGGTGTGAATCTCAAAGAACGTGAAGGAGTTAAGAATCATCATGACAAAGGAGTTTGGGCTAAAGTTTTGACCAAGGAGGATGATAGGAATGGTGACAAAGATGGACTCCGTGACCTCCTGAGGATGACGAAGGGCTCAAAGGACAGAGGTTTTAAATTCTTCATGGAATGCTTTTGGGGCAAGCCTGTTTCTGATAAAGATGATCAGAATGATTTGGAAGAGAAGGATGGTGGTGATGCTGTTCAGGTTCAGACTCAGTCATTGGCTTGTATGCAGGGAATCCTTTTGACGTTGGACTTTCTGAAGAAAAAACCTGTTGAAAAATCAGAGTCTGAGAAAGAATTAGATATGCTGTGGGCTGAAATGGATATGTGTCTTCGAAATGAAGAAATTGGGTCCCAGGTTGAAAGGGAAGAAGAAAATCCAGGCTCACATTGTGAGCATGACAATATTTTCGACGAGGAGATTGGGATACAATGCAGATGGTGTGGAAGGATTGAGATTGAAATCAAATACATCACGCCACCATTTGTGGATTTTGAAAGATCAGGTAGAAGGGTGTCATCAAGAGGAGGGAACAACGCAGAATTTGATGAAGCTATGTTCAATGAATCTGCTGATGACTCCAAGGCAGTTTGCTCTCGCAATGAAGGCACAATCTGGGATCTTATTCCTAGCAAAAAACAAAAGTTGTTTCCTCATCAACAAGAAGGGATTGAGTTCATTTGGGCAAATTTGGCAGGAACCATCGACCTTGGAAAGTTAAGGAAGGTTGACCCGCACAGTGAGGGTGGTTGCATTATTTCACATGCTCCTGGAACAGGAAAGACAAGGTTGACAATGGTGTTTCTCCAGACATATTTGCAACTGTTTCCGAAGTGTCTTCCTGTTATCATAGCTCCTGCCAACATATTGCTCACATGGGAAGATGAGTTGAGGAAATGGAACATAGGAATTCCATTTCATAACCTGAACAATGCTGAATTGTCAGGGAATGAAATTGGAGTTAGTGAATTTGCCTATCGAGAGCTGAATAAGGATGACACAAGAATGCAGAAGTTGTATTCATGGTACAGAGAGAAAAGCATCCTGTTAATCAGCTATAACTTATTTGAGAAGCTAGCTGGGGGGAAGTTGGAAGATGATGATGATGAGAAGAAAAAAGGAAGATTGGAAAACAGAAGAAACGCGCAAGGCCTAGGGAGTGCATTGAAACTGCAATGGGAAAAATATTGCGAAAGGAAAGCTTCTAGACATGTGACTTGGGAACCCGTTTCTAATGGTGATGAGAAAATAAACCAGCTTAAGTTGCTGATGAACCCCTTTGTGCATGTTCACAAAGGTAGCATTCTCCAGAAGAACCTTCGTGGGTTGAGAGATTGCGTGCTGGTTTTGAAGCCAGAAATCTTGCAACAAGAAATTCTGGAGAGCATTGAATGTTCTCAGAATGCACTCAATTTTGAACATAAGCTGGCCTTGGTCTCTGTACATCCATCCCTTTTCCTCAACTGCTCTCTGTCAAAAAAAGAAGAATCTGTTATTGACAGGGATCAGTTAAAGAAGCGAAGATTGAACCCTTATGAAGGGGTCAAAACCAAGTTTCTGAAGGAGTTTGTGAATTTATGCGATGCACTTAATGAGAAAGTCCTTGTTTTCAGCCAATTTATTGATACCTTGGACTTAATTAAGGACCAACTCAAGTCAGCCTACAATTGGTCCGAGGGCAACGAAGTGTTGTTTATGCATGGCAAGCTTGATCAAAAGCAGAAGCAGTTCCTCATCCATAGGTTCAATGATGAAAATAGCCAAGCAAAGGTGCTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAGTTGGAGCTTCGAGGGTCGTGCTTCTCGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAGACAAGGGTCGTTTACACTTATCATCTCCTTGCACAGGGAACCCCTGAATGGACCAAATATTGTAAACAAGCAGAAAAAAACCGGGTATCTAAACTAGTTTTCTCAAACGGAAATGCTGAGAATGATAGGCTCAAAAGTAGCGGAGTAGTGTCTGAGGATGGAGTTATTGAGGATAAAGTTCTTGATAGCATGGTTCAGCATGAAAAACTCATGGATATGTTTGGAAAATGTCTGGTTCAACCAAAGGATGGAGATCTGGAGTTTTTGGGCTCCTGA 3321 0.4306 MDKRVSVAGRTRSKGFTVLSGLEMGRKRRRRVNDDDDDVICLGDNASASAKPGSMEMGFEFLGESEEAPAEVFEIGDSDDGEEMVEVKKEEKAEEKVESFAAAAVDDDDDQCGSRPGNPVIFTHLSSSSKSDDGDDDETSDDDFRVDGVDDDDRAEADSECSSTEEEESDGDSSSSDDERRGYRRFVKERVSESWSSGVCRRKGKRKETVEVDDDDDDEEEEEEKWNGADCASVTSSKSDVCKKGIKKAEEEKHAAKRAESVINAELFVGMSSSKCREETKKAEENHHAAKRAESVNARETVVSLTSSCKKKKPVEQETDKEIMNMLWEEFDIALQEAETRDDDSTMTAMMKWRVKEDRANANGCGVNLKEREGVKNHHDKGVWAKVLTKEDDRNGDKDGLRDLLRMTKGSKDRGFKFFMECFWGKPVSDKDDQNDLEEKDGGDAVQVQTQSLACMQGILLTLDFLKKKPVEKSESEKELDMLWAEMDMCLRNEEIGSQVEREEENPGSHCEHDNIFDEEIGIQCRWCGRIEIEIKYITPPFVDFERSGRRVSSRGGNNAEFDEAMFNESADDSKAVCSRNEGTIWDLIPSKKQKLFPHQQEGIEFIWANLAGTIDLGKLRKVDPHSEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGNEIGVSEFAYRELNKDDTRMQKLYSWYREKSILLISYNLFEKLAGGKLEDDDDEKKKGRLENRRNAQGLGSALKLQWEKYCERKASRHVTWEPVSNGDEKINQLKLLMNPFVHVHKGSILQKNLRGLRDCVLVLKPEILQQEILESIECSQNALNFEHKLALVSVHPSLFLNCSLSKKEESVIDRDQLKKRRLNPYEGVKTKFLKEFVNLCDALNEKVLVFSQFIDTLDLIKDQLKSAYNWSEGNEVLFMHGKLDQKQKQFLIHRFNDENSQAKVLLASIKASSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQTRVVYTYHLLAQGTPEWTKYCKQAEKNRVSKLVFSNGNAENDRLKSSGVVSEDGVIEDKVLDSMVQHEKLMDMFGKCLVQPKDGDLEFLGS 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1618 1106 Coils Coil 246 266 - -
Aed9g1618 1106 Pfam Helicase conserved C-terminal domain 908 1014 IPR001650 -
Aed9g1618 1106 MobiDBLite consensus disorder prediction 174 211 - -
Aed9g1618 1106 Gene3D - 822 1089 IPR027417 -
Aed9g1618 1106 Gene3D - 568 752 IPR038718 -
Aed9g1618 1106 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 2 753 - -
Aed9g1618 1106 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 775 1101 - -
Aed9g1618 1106 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 775 1101 IPR044567 GO:0080188
Aed9g1618 1106 Pfam SNF2-related domain 600 736 IPR000330 GO:0005524|GO:0140658
Aed9g1618 1106 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 899 1071 IPR001650 -
Aed9g1618 1106 MobiDBLite consensus disorder prediction 75 231 - -
Aed9g1618 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 739 IPR027417 -
Aed9g1618 1106 CDD SF2_C_SNF 871 1025 - -
Aed9g1618 1106 SMART helicmild6 925 1014 IPR001650 -
Aed9g1618 1106 MobiDBLite consensus disorder prediction 82 113 - -
Aed9g1618 1106 MobiDBLite consensus disorder prediction 212 226 - -
Aed9g1618 1106 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 753 IPR044567 GO:0080188
Aed9g1618 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 817 1066 IPR027417 -
Aed9g1618 1106 MobiDBLite consensus disorder prediction 134 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1618 Aed-Chr9 19475008 19479807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1618 912 1059 RAD5 or RAD16-like Gene Family AT5G43530 38.514 1.44e-19 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1618 K10875 - gmx:100807262 1043.49