Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1616 ATGTGTTCCGGTTATGAGTTCCTGGAAGAACCACTCTGTGTTCCACATGATCCGGTAGAAAGTTTAGAATTTATGAATTTTTGGGAGGGCATGGATGATTCAATCTCCATTGATTTCCTGTTTCCTGACACTTTAGAGAATAAGAAGGTTGGATCAGATAAAACTGATCATGAATCTCTACTAACGCTGCTGCAATACGACAACGACAAGTTGAATCTAGCTAAGAACACTCGCACCAAGATATCGAAAACAAAAAATATAACCACACAATCATCGTTCAAGTGCAGAGTTAATCTTCTGAATTCTTCAACGCAGCAGAATCAGAGGCGGGTTGCTAAGATCTGGGACAGAAGATGTGATCAAGATGATACTAACACTTGGGAGAGAAGATGTAGTCATTGTGATGCCAGAAAAACTCCTCAATGGAGAACCGGTCCGTCCGGCCGACATACGTTGTGCAATGCTTGTGGTATACGATTCAAGGCAGGGAAACTGTTTCCGGAGTATAGACCGGCAGAAAGTCCAAGTTTTGATGAGAGCAAGCATTCAAATGTTCACAGGGCGATATTGAAAATGAGAGGAGATCACCTGATTTAG 597 0.4204 MCSGYEFLEEPLCVPHDPVESLEFMNFWEGMDDSISIDFLFPDTLENKKVGSDKTDHESLLTLLQYDNDKLNLAKNTRTKISKTKNITTQSSFKCRVNLLNSSTQQNQRRVAKIWDRRCDQDDTNTWERRCSHCDARKTPQWRTGPSGRHTLCNACGIRFKAGKLFPEYRPAESPSFDESKHSNVHRAILKMRGDHLI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1616 198 CDD ZnF_GATA 130 181 IPR000679 GO:0006355|GO:0043565
Aed9g1616 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 184 - -
Aed9g1616 198 PANTHER GATA TRANSCRIPTION FACTOR 75 194 - -
Aed9g1616 198 SMART GATA_3 125 175 IPR000679 GO:0006355|GO:0043565
Aed9g1616 198 Pfam GATA zinc finger 131 162 IPR000679 GO:0006355|GO:0043565
Aed9g1616 198 PANTHER GATA TRANSCRIPTION FACTOR 1 75 194 - -
Aed9g1616 198 ProSitePatterns GATA-type zinc finger domain. 131 156 IPR000679 GO:0006355|GO:0043565
Aed9g1616 198 ProSiteProfiles GATA-type zinc finger domain profile. 125 161 IPR000679 GO:0006355|GO:0043565
Aed9g1616 198 Gene3D - 119 176 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1616 Aed-Chr9 19403468 19404064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1616 49 193 C2C2-Gata Transcription Factor Family AT4G34680 41.781 1.42e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed9g1616 GATA 1.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1616 - - gmx:102662403 216.083