Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1599 ATGGAAAGTGATGCTGGAGAAAACTTATTTGCCACATTCTCTTCTTCCTCTAACACCATCACCACATCATCAACATCATCACCGACATCTTCAACCTCAAGCTCAAACTCATGCACCAAGCAAGATTATTCAAATTCAACAGCAGCAGCAGCAGCTCAAGATCAAAATCAAAACACCCCAAATGGAAAGAAAAGGCAAAGAAGTGAGAATGAGAATGATCAGAATATTGACAACAACACCAGCTATAGAGGTGTGAGAATGAGGGCATGGGGAAAATGGGTGTCTGAGATCAGAGAGCCTAGGAAAAAGTCAAGGATATGGCTTGGTACATACCCTACTGCAGAAATGGCAGCAAGGGCACATGACGTGGCAGCTTTGGCCATCAAGGGCAATTCAGCTTTCCTCAATTTCCCAAACTTGGCTCAAGATCTTCCTAAACCCACCACCACTTCCCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAGCAATTACCACTTTCTTTCATCATCATGAAAAAACTGATCAGCAAAACCATGCAGAACAACAACAACAACAAAGTTCATATTCAAGTACTCTATCTATGGACACCACCACTACTCAAGAGTCTTTGAATTCTCCCTCTACTGCTGCAGATGAAGAAGACACTTTGTTTGACCTACCAGATCTTTTCCCTGATGGAAACAGTGATCTTTTCTCTTATTCTTCTTCTTCTTGGCATTTGTGTGCGGTTGATAGTGGATTCAGGCTTGAAGAGCAGATTTTGTGGGAGAATTTCTAG 783 0.4266 MESDAGENLFATFSSSSNTITTSSTSSPTSSTSSSNSCTKQDYSNSTAAAAAQDQNQNTPNGKKRQRSENENDQNIDNNTSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSAFLNFPNLAQDLPKPTTTSPKDIQAAAAKAAAITTFFHHHEKTDQQNHAEQQQQQSSYSSTLSMDTTTTQESLNSPSTAADEEDTLFDLPDLFPDGNSDLFSYSSSSWHLCAVDSGFRLEEQILWENF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1599 260 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Aed9g1599 260 MobiDBLite consensus disorder prediction 180 213 - -
Aed9g1599 260 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Aed9g1599 260 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Aed9g1599 260 PANTHER ETHYLENE RESPONSE FACTOR 3 260 - -
Aed9g1599 260 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Aed9g1599 260 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 260 - -
Aed9g1599 260 MobiDBLite consensus disorder prediction 1 82 - -
Aed9g1599 260 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Aed9g1599 260 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Aed9g1599 260 MobiDBLite consensus disorder prediction 173 213 - -
Aed9g1599 260 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Aed9g1599 260 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
Aed9g1599 260 MobiDBLite consensus disorder prediction 8 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1599 Aed-Chr9 19095501 19096283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1599 77 253 AP2-EREBP Transcription Factor Family AT2G44940 53.299 2.25e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed9g1599 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1599 - - gmx:100792964 292.352