Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1581 ATGTTGGATTATGAGTGGGGGAGCCCTTCCACGATCATACTCGCCGGAAATGAAGGCGGGGTCGGCGGCGGCGAACCCGATCAGACTCGCCGCCAAATCTTCGACCACAACTTCACCATGCTAACTGACAACAACAACCACCACAACAACAGCAGCAACAACAACATTCTACATGGTTCTGCTGCACCAATTAGTACCACTAACGGTTTTTTCTCTCATCACCACCACTTCAACTTCAACAACCCACCACAACAACAGCACCACGCGTTCTTCGACCCACGCGCCTTCCAAGACGCGTCCACGTCCACCACTTCATTCTCGCCGCCGCCGCCGCCACCTTCGATGCTGTCGCTTAACTCAATCCCGCCTTTAGCCACCTCCCACTTTGGGCTTGGACCTGGTCCCGGGCTTGGATTTCTGCTCATGCCCAAGTCCGAGGATGTGATCATGAGCAACAACTTTGAGGGCTCTGGTCACGTACTCGGACCTGGGCTTGGGCTCAACCTCGGGGGCCGCACCTACTTTCCCTCTTGCAACGACGACACCGCCGGTGGCCGACTCTACCGCAATACCAAGGCGGCCGTTCATACAACGGTGTCGTCGAATTTACCGCGCTGCCAGGCGGAGGGATGCAATGCGGACCTTTCCGACGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTACCACTCCAAGGCCGCCACCGTCGTCACCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTGTGGTTATTTCACCTTCTTTCCGAATTTGACAATGGGAAACGGAGTTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGATAGCTCAAGAAATTCACAAATCTTCTTTGGACAATGTTGTTGCAAAATCCTCGTCCGAGTCCAGAGCTCAATCTTCGCCGCCGCTGAAGGTGACTGCAGTGTTATCACCACCAGATTATTTCCGGCAGCAAATAGTAGCAAACCAAAATAGAGGAGGGTCTTCGTCATCAACAGCATCAGCTGGGTCGTTGTTTTTCTCAAGTGGTTAG 1065 0.5418 MLDYEWGSPSTIILAGNEGGVGGGEPDQTRRQIFDHNFTMLTDNNNHHNNSSNNNILHGSAAPISTTNGFFSHHHHFNFNNPPQQQHHAFFDPRAFQDASTSTTSFSPPPPPPSMLSLNSIPPLATSHFGLGPGPGLGFLLMPKSEDVIMSNNFEGSGHVLGPGLGLNLGGRTYFPSCNDDTAGGRLYRNTKAAVHTTVSSNLPRCQAEGCNADLSDAKHYHRRHKVCEYHSKAATVVTAGLTQRFCQQCSRLWLFHLLSEFDNGKRSCRKRLADHNRRRRKTQQIAQEIHKSSLDNVVAKSSSESRAQSSPPLKVTAVLSPPDYFRQQIVANQNRGGSSSSTASAGSLFFSSG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1581 354 Gene3D - 197 270 IPR036893 GO:0003677|GO:0005634
Aed9g1581 354 Pfam SBP domain 206 282 IPR004333 GO:0003677
Aed9g1581 354 ProSiteProfiles Zinc finger SBP-type profile. 203 283 IPR004333 GO:0003677
Aed9g1581 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 329 IPR044817 GO:0003677
Aed9g1581 354 MobiDBLite consensus disorder prediction 297 316 - -
Aed9g1581 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 110 329 - -
Aed9g1581 354 MobiDBLite consensus disorder prediction 331 354 - -
Aed9g1581 354 SUPERFAMILY SBT domain 204 284 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1581 Aed-Chr9 18749061 18751278 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1581 1 253 SBP-box Gene Family AT1G02065 39.098 2.63e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed9g1581 SBP 5.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1581 - - gmx:100808178 352.058