Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1562 ATGGGAGCTCGTTGCTCTAAATTTTCTCTCTGCTGGTGGCCTTCCCACATCAAATCAAACCTTCACAACTTGTCTGATAATGATGATGATGGGAAGAGGAATGAGAAGGATCCTTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGTTAAGAGTTGCAACCTCAGGATTTTCACCAGACAACATTGTCTCAGAGCACGGCGAGAAGGCTCCAAACGTTGTCTACAGAGGGATGCTTGAGGATGATAGGTTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGTTCGTGCTGATTCTGCTTTTGCTTTTGAGGAGGCACGTGCTGTGGGGCAGCTAAGGAATGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGGTTGCTTGTGGAAGAGTTCATGCCCAATGAGACTCTCAACAAACACCTTTTTCATTGGGAAACCCAGCCTGTGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCATTGGAATACTGCAGCAATAAAGGAAGGGCATTGTACCATGATCTTAATGCTTACAGAATTTTGTTTGATCAGGATGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGTTATAGTACAAATTTAGCTTTCACTCCTCCAGAGTACTTGAGAACAGGAAGGATTACCGCTGAAAGTGTAATTTACAGTTTTGGCACCCTATTGCTTGATCTTCTGAGTGGAAAGCATATCCCACCCAGTCATGCACTTGACCTTATACGAGGCAAAAATTTTCTGATGCTGATGGACTCGTGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTGGTGAGATTAGCTTCCCGTTGTTTACAATATGAACCCCGTGAGAGACCAAATGTTAAGTCGCTTGTGACTGCTCTAACCCCTCTTCAGAAAGAAACTTTGGTACCGTCAAATGTTTTAATGGGTATACCAGATAGGAGTCAGTCATCAAAGAAAACAGTTTCGTTGACACCTTTTGGTGATGCTTGTTCAAGAAGAGATCTGACTGCAATACATGAAATTTTGGACAAGGTAGGCTACAGGGATGATGAAGATGTTGCTAATGAGCTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGAAGCAAGGTGATTCTGCTTTTCATGCTAGAGACTTCTCCACGGCCATTGACTGCTATACACAATTCATTGATGGTGGAACCATGGTATCACCAACCGCGTACGCCAGGCGTTGCTTATGCTACCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCAATATCTCCCACTTGGCCAACTGCATACTATCTTCAGGGAGCTGCTCTCTTCAGCCTTGGCATGGATAATGATGCACAGGAAAGTCTTAAAGATGGCACAACACTGGAAACCAGGAAGTATATAAATTGA 1506 0.4382 MGARCSKFSLCWWPSHIKSNLHNLSDNDDDGKRNEKDPWGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYRGMLEDDRLVAVKRFNKSAWPDSRQFLVRADSAFAFEEARAVGQLRNERLANLVGCCCEGEERLLVEEFMPNETLNKHLFHWETQPVKWAMRLRVALYLAQALEYCSNKGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETLVPSNVLMGIPDRSQSSKKTVSLTPFGDACSRRDLTAIHEILDKVGYRDDEDVANELSFQMWTNQIQETLNSKKQGDSAFHARDFSTAIDCYTQFIDGGTMVSPTAYARRCLCYLMNDMAQEALGDAMQAQSISPTWPTAYYLQGAALFSLGMDNDAQESLKDGTTLETRKYIN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1562 501 SUPERFAMILY Protein kinase-like (PK-like) 39 326 IPR011009 -
Aed9g1562 501 Gene3D Transferase(Phosphotransferase) domain 1 146 337 - -
Aed9g1562 501 ProSiteProfiles Protein kinase domain profile. 60 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g1562 501 Gene3D Phosphorylase Kinase; domain 1 31 144 - -
Aed9g1562 501 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 499 IPR045845 GO:0004672|GO:0009742
Aed9g1562 501 Gene3D Tetratricopeptide repeat domain 394 499 IPR011990 GO:0005515
Aed9g1562 501 Pfam Protein tyrosine and serine/threonine kinase 74 320 IPR001245 GO:0004672|GO:0006468
Aed9g1562 501 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 499 - -
Aed9g1562 501 SUPERFAMILY TPR-like 398 497 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1562 Aed-Chr9 18544443 18548761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1562 45 320 Glycoside Hydrolase AT3G07070 32.895 2.51e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Aed9g1562 PK_Tyr_Ser-Thr 6.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1562 - - gmx:732542 938.717