Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1557 ATGAGGAAGCCCGAGGTAGCAGCAGCATCTGCAAAAAACAACAACAACAACAACATTAATATAAACAACAGCAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGAGAAACTGATGAACTACATGGTAAACAGTGGACAAGGTTGTTGGAGCGATGTCGCAAGAAATGCTGGGCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCTCCACATGAAGAGGAACTCATCATCCATTTCCATTCCCTTCTCGGAAACAGAGCCATCACTAGGTGGGGTGGGGTTAATTTAGATGAATAA 345 0.4406 MRKPEVAAASAKNNNNNNININNSKLRKGLWSPEEDEKLMNYMVNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPHEEELIIHFHSLLGNRAITRWGGVNLDE 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1557 114 SUPERFAMILY Homeodomain-like 30 102 IPR009057 -
Aed9g1557 114 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Aed9g1557 114 Gene3D - 25 81 - -
Aed9g1557 114 PANTHER TRANSCRIPTION FACTOR MYB46 1 102 - -
Aed9g1557 114 CDD SANT 31 75 IPR001005 -
Aed9g1557 114 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Aed9g1557 114 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Aed9g1557 114 SMART sant 27 77 IPR001005 -
Aed9g1557 114 PANTHER MYB DOMAIN PROTEIN 55 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1557 Aed-Chr9 18527217 18527764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1557 1 102 MYB Transcription Factor Family AT5G12870 72.549 4.17e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed9g1557 Myb_DNA-binding 6.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1557 K09422 - gmx:100785810 171.4