Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1552 ATGGTGGCGACGGCGATCGAGGAAGTGCGAACTCTGTGGATTGGTGATTTGCAGTACTGGGTGGAGGAGTCCTACCTCTCTCAGTGCTTCGCCCACAGCGGTGAAGTGGTTTCCATCAAAATCATACGCAATAAGATGACGGGCCAGCCCGAGGGGTACGGCTTCGTCGAGTTTGTTTCCCACGCTTCGGCCGAAGCCTTTCTCCGCACCTACAACGGAGCCCAAATGCCTGGCACTGAACAGACCTTCAGGCTCAATTGGGCCTCCTTCGGTGATGCTGGGCCCGACCACTCCATCTTCGTCGGCGATCTCGCCCCTGACGTCACCGATTTCCTCCTCCAGGAGACTTTTCGGGCCCATTATCCCTCCGTTAAAGGGGCCAAAGTCGTCACCGACCCCGCCACCGGCCGCTCCAAGGGCTATGGCTTCGTTAAATTCGTCGATGAGGCCCAGCGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACTCGCCCAATGCGTATCAGCGCCGCCACACCTAAGAAGAACGCTTCTTTTCAACACAACTATGCTCCACCTAAACCTGCAATGTATCAATATCCTGCATACACTGCTCCGGAGGAGCTTAAGCAAACCTTTATGCAATTTGGAGATATTGTGTCGGTCAAAATTTATGAGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGTGTCTGCTGAAGACGCCATTCAGAGGATGCAAGGGAAGTTAATAGGTCAACAAGTGATCCAAATTTCTTGGGGCAGTACCTTGACAGCTAGACAGGTTGAAGGTGCTCAAGACATATCAGCAGAGTCTCTGCCAATGGAAGAATTGTATGATCCCCTGGCAATGCCTGATGTCGATAGATTAAATGCTGCATATCTGTCAATACATGGCAGTTCCATTTTAGGGCGGTCCCTTTGGCAGAGAACTTCACAATCTTTACAGCAAGCCTAG 972 0.5134 MVATAIEEVRTLWIGDLQYWVEESYLSQCFAHSGEVVSIKIIRNKMTGQPEGYGFVEFVSHASAEAFLRTYNGAQMPGTEQTFRLNWASFGDAGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFVDEAQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQHNYAPPKPAMYQYPAYTAPEELKQTFMQFGDIVSVKIYEGKGYGYVQFGTRVSAEDAIQRMQGKLIGQQVIQISWGSTLTARQVEGAQDISAESLPMEELYDPLAMPDVDRLNAAYLSIHGSSILGRSLWQRTSQSLQQA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1552 323 CDD RRM1_SECp43_like 11 91 - -
Aed9g1552 323 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 5 187 - -
Aed9g1552 323 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 202 272 - -
Aed9g1552 323 SUPERFAMILY RNA-binding domain, RBD 95 259 IPR035979 GO:0003676
Aed9g1552 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 261 IPR000504 GO:0003723
Aed9g1552 323 CDD RRM2_SECp43_like 96 175 - -
Aed9g1552 323 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 202 272 - -
Aed9g1552 323 Gene3D - 9 89 IPR012677 -
Aed9g1552 323 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 5 187 - -
Aed9g1552 323 Gene3D - 96 173 IPR012677 -
Aed9g1552 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 254 IPR000504 GO:0003723
Aed9g1552 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Aed9g1552 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 80 IPR000504 GO:0003723
Aed9g1552 323 Gene3D - 194 266 IPR012677 -
Aed9g1552 323 SMART rrm1_1 197 257 IPR000504 GO:0003723
Aed9g1552 323 SMART rrm1_1 98 172 IPR000504 GO:0003723
Aed9g1552 323 SMART rrm1_1 11 86 IPR000504 GO:0003723
Aed9g1552 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Aed9g1552 323 SUPERFAMILY RNA-binding domain, RBD 6 78 IPR035979 GO:0003676
Aed9g1552 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1552 Aed-Chr9 18495056 18498445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1552 11 268 Eukaryotic Initiation Factors Gene Family AT1G71770 25.279 1.72e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1552 - - gmx:100794427 580.482