Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1547 ATGCAGGTGATCATGGTCTATCTAACGAGTTTGCGTGTAGGTGAAACCAGCTCCAGCGCAGCGCAAGTGAGTGACGAAGCCATTATCACTCATCTCGCTCGCACCAAAAGCGATGAAGCTCTAGACTGCAGATTGCTTGTCTGGCAGAAAGGATTCAAAATGAGTTGGAACCCACACATGGAGGTCCATTACAATAACATTAGCTATCCCTATAATACAGCAGGAAGCTTTATCGAATATTTTGAAGGTCTCACTTATGAACATGTCAACTTCATTTTTTCTGGTGCATCACATTCTCAGGATAGTTCATACCCTTCAAATTCAAGCTTTTACAAATTTGGACTATCTGAACCAGAGAATACTTCATACTATCGTTACAGTCATGGCTATGAGGTAAATCATCACGAACCACTAGTGGATGAGTATAGGAGACCTTCAGAGAACTCATTGACAATCAATGAACAGACAGCAGCAGTAAGCACAGAATGGGTTGAAGGTGGAAACACTGACACACGAGACAATTCTATTGAATGTCCTCGAAGACATCATAGTAATTCAAGTGATTATCAGGTTATTTGGCAAGACAATATTGATCCAGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAAGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTCACTGCCAGTGTCGAAGTACAAATGTGGGTTCTTCTTGAGGAAGAAATCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGTATCACCTTGCCATGTAAACATGTTTATCATGCTAGTTGTGGGAACAGGTGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAACACAAATAA 906 0.4194 MQVIMVYLTSLRVGETSSSAAQVSDEAIITHLARTKSDEALDCRLLVWQKGFKMSWNPHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHSQDSSYPSNSSFYKFGLSEPENTSYYRYSHGYEVNHHEPLVDEYRRPSENSLTINEQTAAVSTEWVEGGNTDTRDNSIECPRRHHSNSSDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISSLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKACPICYTEVFADKSKHK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1547 301 ProSiteProfiles Zinc finger RING-type profile. 249 289 IPR001841 -
Aed9g1547 301 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 54 299 - -
Aed9g1547 301 SUPERFAMILY RING/U-box 243 296 - -
Aed9g1547 301 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 54 299 IPR033276 GO:0004842|GO:0016567|GO:0046621
Aed9g1547 301 SMART ring_2 249 289 IPR001841 -
Aed9g1547 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 295 IPR013083 -
Aed9g1547 301 Pfam Ring finger domain 248 289 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1547 Aed-Chr9 18468158 18472452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1547 58 300 C3H Transcription Factor Family AT3G63530 44.177 4.95e-66 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1547 K19045 - gmx:100793907 513.457