Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1546 ATGACCAATTCCTACACCTCCAATGACCTTAACTTTTGGTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTCCTAATTCCATCAATCCACCTTTCTATTTTCCTTCTTCCAATTACCATAATAATAATAACTACACAAGTGCCATATCTTCTACTCATCATCAGTTCCAACCCTCTCAAGCCCTTCCCCTCCTTCATTCAAGACATGAAGAAGCACAAGAAGATCTTGAATCTTCATTCAGTGCCATGGAAGTGGACAAGAAAAGGAAAGAGATAAGTTCATCATCTAGCTGCTTATTGGATGAAGAGGATGCTGCAGTGACTGTGGCTTTACACTTAGGGCTTCCAAGTGCATCTGCAAGCCTTTACTCAACAGAGGCTTCAGACAAAGAAGTAGTAGAAGAAGAAAAAGTAGTGACTGATGCTTCTTCTCTGTCAAATAGAATTAACAGAGGAGGACAATATTGGATCCCTACTTCTTCTCAGATTCTGATTGGTCCAACACAGTTCCCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGGAAGGGACCAGAGTCTCTGAGGGGAACACAACCAACAGCTATGCTAAGACTTCCTTGCTATTGCTGTGCACCAGGATGCAAGAACAACATCGACCATCCGAGAGCAAAGCCACTCAAAGACTTCAGAACCCTCCAAACTCATTACAAGAGAAAGCATGGGACAAAGCCTTTTGTGTGCAGAAAATGCTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGAACTCATGAAAAGAACTGCGGGAAACGCTGGTATTGCTCTTGTGGTTCTGATTTTAAGCACAAAAGATCTCTTAAGGATCATATCAAGGCATTTGGGTATGGACACACGGTTTATGGAAACGACTGCAATAATCTTGATCAAGACGATGATCAAGTGGGTTCTGAAATTGAAATATAA 993 0.4209 MTNSYTSNDLNFWLDLNSPCLLSSPSPNSINPPFYFPSSNYHNNNNYTSAISSTHHQFQPSQALPLLHSRHEEAQEDLESSFSAMEVDKKRKEISSSSSCLLDEEDAAVTVALHLGLPSASASLYSTEASDKEVVEEEKVVTDASSLSNRINRGGQYWIPTSSQILIGPTQFPCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTVYGNDCNNLDQDDDQVGSEIEI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1546 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Aed9g1546 330 SUPERFAMILY beta-beta-alpha zinc fingers 238 276 IPR036236 -
Aed9g1546 330 Gene3D Classic Zinc Finger 215 303 - -
Aed9g1546 330 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 6 329 - -
Aed9g1546 330 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
Aed9g1546 330 PANTHER ZINC FINGER PROTEIN WIP2 6 329 IPR043584 GO:0003700|GO:0010468
Aed9g1546 330 Gene3D Classic Zinc Finger 171 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1546 Aed-Chr9 18461398 18463730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1546 34 329 C2H2 Transcription Factor Family AT1G51220 58.917 1.22e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed9g1546 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1546 - - gmx:100802239 551.592