Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1542 CATCCTTCTCTCTCTTTCGGCTTTGATTTCTCTCTCCTCGACTCGATCCCAATTCCACTAGGGATTCAATTCCGATGCGATTCTGAGCTTGTTAGATCCACGACAAGGTTTCGTTTCCCAGATTCTTTTGTAAAAAAAATTCTTCCTCTGCCCAGCAGGAAAGTTGGAAAAAAAATGGACCATGACAAGACTGGGTGCCAAGCTCCTCCTGAAGGTCCTATATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCGGCTACCATGAACATGTGTTCTAAATGCCACAAAGACATGTTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCAGCACTGAAACCGAACCTGTTGTTGCTGCTGCTAATGTTGATATCCCAGTCATTCCAGTAGAGCCTAAAACTGTCTCTGTGGTACCTTTATTTGGTTCAGGTCCAGAGGGGAGTGATGAGGCAAAGCCGAAGGATGGACCAAAACGTTGCAGCAGTTGCAACAAGCGAGTTGGTTTAACAGGGTTTAATTGTCGATGTGGCGACCTATTTTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCTCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATTTAA 699 0.4521 HPSLSFGFDFSLLDSIPIPLGIQFRCDSELVRSTTRFRFPDSFVKKILPLPSRKVGKKMDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMLLKQEQAKLAASSIGNIMNGSSSSSTETEPVVAAANVDIPVIPVEPKTVSVVPLFGSGPEGSDEAKPKDGPKRCSSCNKRVGLTGFNCRCGDLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1542 232 ProSiteProfiles Zinc finger AN1-type profile. 167 213 IPR000058 GO:0008270
Aed9g1542 232 SMART AN1_Zf_4 173 210 IPR000058 GO:0008270
Aed9g1542 232 SMART A20_3 73 97 IPR002653 GO:0003677|GO:0008270
Aed9g1542 232 PANTHER AN1-TYPE ZINC FINGER PROTEIN 59 232 - -
Aed9g1542 232 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 59 232 - -
Aed9g1542 232 Pfam A20-like zinc finger 74 97 IPR002653 GO:0003677|GO:0008270
Aed9g1542 232 ProSiteProfiles Zinc finger A20-type profile. 70 104 IPR002653 GO:0003677|GO:0008270
Aed9g1542 232 Gene3D - 59 128 - -
Aed9g1542 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 75 111 - -
Aed9g1542 232 Pfam AN1-like Zinc finger 173 209 IPR000058 GO:0008270
Aed9g1542 232 Gene3D - 156 228 IPR035896 -
Aed9g1542 232 SUPERFAMILY AN1-like Zinc finger 159 227 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1542 Aed-Chr9 18442226 18444942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1542 66 232 C2H2 Transcription Factor Family AT3G52800 43.275 1.07e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1542 - - gmx:100500070 321.242