Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1541 ATGAACAACAACTGGCTTTCGTTCCCTCTTTCTCCTACTCATTCTTCCTTACCAGCTCATGATCTTCAAGCAACTCAATATCATCAATTTTCCCTTGGGCTAGTGAATGAGAACATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAACTTGCTGCCTTAAACGAAATTCAGTCAAATGAATCAGATTATCTGTTCACAAACAACAGTCTTATGCCTATGCAAAACCCAGTGGTGGGCACACCTAGCAATGAGTATCAAGAAAACGCTAATAGTAATTTGCAATCATTGACATTATCCATGGGAAGTGGCAAGGATTCAACATGCGAAACCAGTGGTGAAAATAGCACAAACACTAGTACTGTTGAAGCTGCTGCTGCTGCCGCACCTAGGAGAACTTTGGATACATTCGGGCAGAGAACATCCATATATCGTGGAGTAACGCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGCCAATCAAGAAAAGGCCGTCAAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCTGCACTGAAGTACTGGGGGGCATCCACCACTACCAACTTTCCAATTAGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACGAGACAAGAATTTGAAAAGCAGTGGTTTCTCCAGGGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTCTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCTGAAGCATACGACATAGCAGCGATAAAGTTCAGAGGTCTGAACGCTGTGACCAACTTTGACATGAGTCGTTACGACGTGAAAGCCATTCTGGAAAGCAACACTCTCCCAATAGGAGGAGGCGCTGCAAAGCGTCTGAAAGAAGCTCAAGCTCTTGAATCTTCGAGAAAACGCGAAGAGATGATTGCACTAGGATCGTCATCAACATTCCAATACGGAACCTCATCAAGCTCTTCTAGGCTTCACGCTTACCCTCTAATGCAGCAGCACCAGTTCGAGCAACCTCAACCTCTGCTAACTTTGCAGAACCATGACATGAGTTCTCACTTCTCTCACCCCCATCAAGATCCTAACTTGCACCCGGGTGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGGGTGGCGCCGCTTCTTCTTATAATAATAGCCTTCAGAATAATGCTCAGTTCTACAATGGTTACCTTCAGAACCACCCTGCACTACTTCAGGGAATGCTGAACATGGGGTCTTCTTCTTCTTCTTCGTCTGTGTTGGAGAATAATAATAATAATAATGTTGGTGGGTTTATAGGGAGTGGGTTTGGTATGGCTTCGAATGCAACGTCGGGGAACACGGTGGGAACGGCGGAGGAGCTAGGGTTGGTGAAGGTGGACTATGACATGCCGGCCGGAGGTTACGGGGGCTGGTCGGCGGCGGCGGCGGAGACCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGACGTCTGA 1629 0.4616 MNNNWLSFPLSPTHSSLPAHDLQATQYHQFSLGLVNENMENPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNESDYLFTNNSLMPMQNPVVGTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTSTVEAAAAAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGASTTTNFPISNYEKELDEMKHMTRQEFEKQWFLQGHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSSTFQYGTSSSSSRLHAYPLMQQHQFEQPQPLLTLQNHDMSSHFSHPHQDPNLHPGGYIQTQLQLHQQGGAASSYNNSLQNNAQFYNGYLQNHPALLQGMLNMGSSSSSSSVLENNNNNNVGGFIGSGFGMASNATSGNTVGTAEELGLVKVDYDMPAGGYGGWSAAAAETMQTSNGGVFTMWNDV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1541 542 CDD AP2 261 313 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 251 - -
Aed9g1541 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 260 540 - -
Aed9g1541 542 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 SMART rav1_2 260 317 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 SMART rav1_2 169 238 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 MobiDBLite consensus disorder prediction 128 150 - -
Aed9g1541 542 ProSiteProfiles AP2/ERF domain profile. 169 232 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 SUPERFAMILY DNA-binding domain 168 234 IPR016177 GO:0003677
Aed9g1541 542 CDD AP2 168 234 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 MobiDBLite consensus disorder prediction 128 153 - -
Aed9g1541 542 Pfam AP2 domain 169 224 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 Pfam AP2 domain 263 303 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 251 - -
Aed9g1541 542 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 260 540 - -
Aed9g1541 542 Gene3D AP2/ERF domain 258 313 IPR036955 GO:0003700|GO:0006355
Aed9g1541 542 Gene3D AP2/ERF domain 169 234 IPR036955 GO:0003700|GO:0006355
Aed9g1541 542 ProSiteProfiles AP2/ERF domain profile. 246 311 IPR001471 GO:0003700|GO:0006355
Aed9g1541 542 SUPERFAMILY DNA-binding domain 261 313 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1541 Aed-Chr9 18428241 18431012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1541 3 541 AP2-EREBP Transcription Factor Family AT1G51190 59.766 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Aed9g1541 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1541 K09285 - gmx:100788471 870.152