Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1539 ATGGAAATGGAATCAGCAGCAACAGCTCCTCCCCCGTCGCGGGAGCTGGACCTCGACAACCTCAAACCCATCAAAGTCCTAGGAAAAGGCGCCATGGGAACTGTGTTCCTCGTCAACGACACAAGCAACAACAATGCCCCCTTCGCCCTGAAAGTGGTGGACAAAACGTGCGTCCACGCGAAGCTGGACGCGGAACGGCGCGCGCGTTGGGAAATCCAAGTCCTCTCAATGCTCTCCCACCCCTTCCTCCCTTCTCTTCTGGGAACGTTCGAGTCTCCACAGTTCCTAGCGTGGGCCCTACCCTACTGCCCCGGCGGCGACCTCAACGTCCTCCGCTACCGCCAAACCGACCGCGCCTTCTCCTCCACCGTCATCCGCTTCTACGTCGCCGAAATCCTCTGCGCGCTCGACCACCTTCATTCCATGGGCATCGCCTACCGGGACCTAAAACCCGAAAATGTCCTCGTCCAAAACACCGGCCACGTCACCCTCACTGACTTCGATCTCTCCCGCAAACTCAATCCAAAACCTAAACCTAAACATAGTCCACAAGTTTCTTTAATCCCCTTGCCCAATTCCAACGCTCCCGAACCTCGCCGGAAACACCGCCGGAATTTCTCCCGCTGGATCCCCCTCTTCCCGCCGGATGGGACTCACTTTAAAAACAATCTCAAGAAGGCCAAGTCCGCACGAGTCAGCCCGGTGAGTCGGAGAAAACTCAGTTTCTCCAACGGCGAGCGCTCCAACTCGTTCGTCGGCACTGAGGAATACGTCTCGCCGGAGGTCGTCCGAGGCGACGGTCACGAGTTCGCCGTCGATTGGTGGTCGCTTGGAATACTCATCTACGAAATGCTCTACGGTACGACGCCGTTCAAGGGCAAGAATCGCAAGGAAACATTCCGAAACGTTATCACGAAGCCGCCGGAGTTCGTCGGAAAACGAACGGCGTTGACTGACCTTATTGAGAAGCTTTTGGAGAAGGATCCGACGAAGCGGTTGGGTTACACGCGCGGCGCGGCGGAGATCAAGGAGCATGGGTTCTTCCGAGGGGTTCGGTGGGAGCTTTTGACGGAGGTGGAGCGGCCGCCGTTTATCCCGTCGCGGGACGATGCTGCCGGTGATTCGACGGAGAGGTTTCCAGACCGAAATTGTGGCGTGGATATTAGGGAATACTTTCAGAAACTTAAATTGTCGCCGTCGGTGCCGGCTTCGCCGGTGATGTCGCCGTCGTACATGTTTAAGAAGAATGTTTCGCTAACAGAATTCTAA 1269 0.565 MEMESAATAPPPSRELDLDNLKPIKVLGKGAMGTVFLVNDTSNNNAPFALKVVDKTCVHAKLDAERRARWEIQVLSMLSHPFLPSLLGTFESPQFLAWALPYCPGGDLNVLRYRQTDRAFSSTVIRFYVAEILCALDHLHSMGIAYRDLKPENVLVQNTGHVTLTDFDLSRKLNPKPKPKHSPQVSLIPLPNSNAPEPRRKHRRNFSRWIPLFPPDGTHFKNNLKKAKSARVSPVSRRKLSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWSLGILIYEMLYGTTPFKGKNRKETFRNVITKPPEFVGKRTALTDLIEKLLEKDPTKRLGYTRGAAEIKEHGFFRGVRWELLTEVERPPFIPSRDDAAGDSTERFPDRNCGVDIREYFQKLKLSPSVPASPVMSPSYMFKKNVSLTEF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1539 422 SMART serkin_6 21 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g1539 422 ProSitePatterns Protein kinases ATP-binding region signature. 27 51 IPR017441 GO:0005524
Aed9g1539 422 Gene3D Transferase(Phosphotransferase) domain 1 107 197 - -
Aed9g1539 422 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 16 399 - -
Aed9g1539 422 Gene3D Phosphorylase Kinase; domain 1 21 106 - -
Aed9g1539 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Aed9g1539 422 Pfam Protein kinase domain 24 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g1539 422 Pfam Protein kinase domain 243 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g1539 422 PANTHER FLIPPASE KINASE 1-RELATED 16 399 - -
Aed9g1539 422 Gene3D Transferase(Phosphotransferase) domain 1 245 367 - -
Aed9g1539 422 MobiDBLite consensus disorder prediction 170 200 - -
Aed9g1539 422 SUPERFAMILY Protein kinase-like (PK-like) 18 406 IPR011009 -
Aed9g1539 422 ProSiteProfiles Protein kinase domain profile. 21 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1539 Aed-Chr9 18412931 18414199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1539 16 422 AGC Kinase Gene Family AT3G20830 59.952 3.38e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Aed9g1539 Pkinase 1.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1539 - K08286 gmx:100785281 736.487