Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1535 ATGGAGTCAGATCTTCAGCAGCACCCTCACATGTTTATGGATCACCACCAGCAGCAGATGAATTCAGCAGGTTTGACACGGTACCGATCGGCGCCAAGTTCGTATTTTTCGAGCATCATTGACCATGAGTTCTACGAGCACGTTTTCAATCGCCCCTCTAGCCCCGAAACAGAGAGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGTGATGCTGCTGTTGATGCTGATGCAGATGCAGAGGATGATGATTCACTTGCTCCCCTAACTGTTGCCGTTAAGGAAGAGGTTAATCAGCAACCTCAGGATGTGACACCCATGAATAATGAACCACCCCTTGTTCTCCAACAACAACAGCAAAGTAGTAATTATGTGTCTTCTGCTCCTCAGAAGTTTTACCAAAACACTGGACGACCACCTCTGCCAAACCAGATGAAGACTGGTCGTGGAATTAGTTCCAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGATACTGGCTATGCTGCTGTAAAGATGAAGAAGAAGAATGCACCAAACTTCTCCGTTGCATTGAGCAATAATAATAATAATAATAATGCAGAAAATGAAGGGTTTGCTGAAAGTAGCCAGGGTAATGAATTTATCCCTGCAGGATTCCCCGTTGGTTCATGGGATGATTCTGCAATCATGTCTGACAACATGACAGGCCTAAAGAGATATAGAGATGATGATGTGAAACCATTCTCTGGTTTAAATGCACCTGAAACTCAGAATAATGAAACTGGAGGCCAACCTTCTTCTTCTGCTTTGGCTCATCAACTGAGTTTGCCAAACACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTTCAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACTAAAATTAGTGAGCGAATGAGGAAGCTACAAGATCTGGTCCCAAACATGGATAAGCAAACAAACACATCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAAGCAAGTTCAGACACTTTCGGACAATCGGGCAAAGTGTACGTGTCCACAGAAGCAGCAACAATAA 1143 0.4409 MESDLQQHPHMFMDHHQQQMNSAGLTRYRSAPSSYFSSIIDHEFYEHVFNRPSSPETERMLTRFVNSLGGGDAAVDADADAEDDDSLAPLTVAVKEEVNQQPQDVTPMNNEPPLVLQQQQQSSNYVSSAPQKFYQNTGRPPLPNQMKTGRGISSNLIRHGSSPAGLFSNINIDTGYAAVKMKKKNAPNFSVALSNNNNNNNAENEGFAESSQGNEFIPAGFPVGSWDDSAIMSDNMTGLKRYRDDDVKPFSGLNAPETQNNETGGQPSSSALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQKQVQTLSDNRAKCTCPQKQQQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1535 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 358 IPR011598 GO:0046983
Aed9g1535 380 Gene3D - 309 379 IPR036638 GO:0046983
Aed9g1535 380 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 180 - -
Aed9g1535 380 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 180 - -
Aed9g1535 380 SMART finulus 314 364 IPR011598 GO:0046983
Aed9g1535 380 Pfam Helix-loop-helix DNA-binding domain 313 359 IPR011598 GO:0046983
Aed9g1535 380 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 191 377 - -
Aed9g1535 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 372 IPR036638 GO:0046983
Aed9g1535 380 Coils Coil 348 368 - -
Aed9g1535 380 MobiDBLite consensus disorder prediction 247 272 - -
Aed9g1535 380 MobiDBLite consensus disorder prediction 253 272 - -
Aed9g1535 380 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 191 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1535 Aed-Chr9 18364440 18368643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1535 1 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.678 2.40e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed9g1535 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1535 - - gmx:100789855 565.074