LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed9g1518	ATGGACTCGGAGGATGATATGCACGACGCCAACGACATCGAGTCCCTCGACGACGATTTCTACAGCGGAGAGACCGAGGACGTTCCCTTGGACTACTACAGCGACTACGATGACGACGCCGATGATTACTTCGAGGACGCCGAAAGGATTGAGTCTCGTCGCCCCGAGCAAAATTTTACCATCTTGAAAGAATCCGATATCCTACAAAAACAGGAAGATGACATCACTAGAGTAGCAACGGTTCTTTCCATATCAAAGGTTTCTGCAAGCATACTACTCCGTCACCACAATTGGAGCGTCAGCAGAGTGCATGATGCATGGTTTGCTGATGAAGAACAAGTCCGAAAATCAGTTGGCTTGTTGGAGAATCCGATTCTTACTTGCGGTATCTGTTTTGAAAATTATCCTAGTGCTAAGATTAAAATGGCTTCCTGTGGGCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCATGATATGATTAATCATATAGTGTCCAATGAAGATAAGCAGAAATATGCACGCTACCTTCTTAGATCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTACTAAAAATTATGATGTCTCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCTGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAATTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAACTCGCTGGAGAGATACACACATTATTATGAGCGATGGGCCAGCAATCAATCTATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAACTTAAGTTCATAACTGAAGCCTGGCTACAAATAGTTGAGTGTAGAAGAGTGCTGAAATGGACTTATGCATACGGGTTCTATTTGCCGGAGCATGAGCATGCAAAAAAACAGTTCTTTGAGTACCTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGCGCAGAAAAGGAACTACAGCCCTTCCTATGTGCTGATGAATCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAGAAACTACTTCGAGAATTTAGTAAGGGCATTAGAAAATGGTCTATCTGATGTGGGTAGTAATGGAGCTGCCTTGGGCAAAGCAACAAGCTCGAAAAATGCTGCTGGGAGCAGTAAGGGGAGATCTGGAAGAGGAAAGGGAGCTTTGCGAACCAGCATGTCCAACAGAATGAATGATGATAGTCATTGGTATTGCGAGCATTGTACCTATGCAAATGTAAAATCTGCCACCACATGCCAGATATGTTATCAACAGCGTTCATGA	1647	0.4359	MDSEDDMHDANDIESLDDDFYSGETEDVPLDYYSDYDDDADDYFEDAERIESRRPEQNFTILKESDILQKQEDDITRVATVLSISKVSASILLRHHNWSVSRVHDAWFADEEQVRKSVGLLENPILTCGICFENYPSAKIKMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCGAAVGHDMINHIVSNEDKQKYARYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSTKNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSIEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADESSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVGSNGAALGKATSSKNAAGSSKGRSGRGKGALRTSMSNRMNDDSHWYCEHCTYANVKSATTCQICYQQRS	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed9g1518	548	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	15	496	IPR031127	GO:0004842\|GO:0016567
	Aed9g1518	548	MobiDBLite	consensus disorder prediction	1	35	-	-
	Aed9g1518	548	ProSiteProfiles	TRIAD supradomain profile.	124	360	IPR044066	-
	Aed9g1518	548	ProSiteProfiles	Zinc finger RING-type profile.	128	172	IPR001841	-
	Aed9g1518	548	SUPERFAMILY	RING/U-box	198	267	-	-
	Aed9g1518	548	Pfam	IBR domain, a half RING-finger domain	197	260	IPR002867	-
	Aed9g1518	548	SUPERFAMILY	RING/U-box	123	209	-	-
	Aed9g1518	548	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	124	210	IPR013083	-
	Aed9g1518	548	MobiDBLite	consensus disorder prediction	487	514	-	-
	Aed9g1518	548	SUPERFAMILY	Ran binding protein zinc finger-like	520	547	IPR036443	-
	Aed9g1518	548	SUPERFAMILY	RING/U-box	279	310	-	-
	Aed9g1518	548	Gene3D	-	256	479	-	-
	Aed9g1518	548	SMART	zf_4	522	546	IPR001876	-
	Aed9g1518	548	CDD	RING-HC_RBR_TRIAD1_like	128	178	-	-
	Aed9g1518	548	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	15	496	-	-
	Aed9g1518	548	ProSitePatterns	Zinc finger RanBP2-type signature.	524	543	IPR001876	-
	Aed9g1518	548	ProSiteProfiles	Zinc finger RanBP2 type profile.	520	548	IPR001876	-
	Aed9g1518	548	SMART	ibrneu5	197	260	IPR002867	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed9g1518	Aed-Chr9	18216350	18224980	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed9g1518	17	547	ARIADNE family	AT1G65430	64.777	0.0	742

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed9g1518	K11968		-	gmx:100784195	1010.75