Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1517 ATGGGAAGCTGCATATCAACGCAAGGCGTGAGGACACGAAAGAGGTCGAGGAGCCCGGCGTACAAGGCGTCGACGCCGGGAGGGCAAGGGCATGGGCACGGGGAGGTGGCGCGGAGGTCGAGCGTGACGGCGCGTCCGGTGAACGTGGTGGCGAATCCGAGCCCGGGGAGCATATTCGACAAGTACCAGCTGGGGAAGGAGCTGGGGAGGGGGGAGTTCGGCGTGACGCACCGCGTGGTGGACTTGGAGACCGGTGAGGCGTTTGCGTGCAAGAAGATAGCCAAGACGAAGCTGAGGACGGAGATTGATGTTCAGGACGTTAGGAGGGAGGTGCAGATCATGCGCCACTTGCCTCATCATCCCAACATTGTTGCATTCAAGGAGGCTTATGAGGACAGAGACGCTGTTTACCTTGTCATGGAATTGTGCGAAGGTGGCGAACTCTTTGATAGGATTGTCGCCAAGGGCCATTACACCGAGCGTGCTGCTGCTAATGTTACCAAGACCATACTTGAAGTTTGCAAGGTGTGTCACGACCACGGAGTAATACACAGGGACTTGAAACCTGAAAATTTCTTATTTGCTGATTCAACCGAGAATGCTGCATTGAACACAGGCGTTATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCAGAGGAAGGGATTGCACAAGCGATCATCAGGAGCAAAGTAGATTTCACAAGGGATCCTTGGCCTAAAGTTTCTGATGAAGCAAAACATCTTGTTAAGTGCATGCTTGATCCAAATCCATACACCCGTATAACAGTTCAGGAAGTTCTTGATCATTCCTGGATACAAAATAGGGAGCATGGTCGAACAATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCCTGATGAACAGATTCAAAAGGAAGGTTCTTAGAGTGGTGGCCGATAACCTGTCAGATGAACAAGTTGATGTGTTTAAGCAAATGTTCGATATGATGGATAAGGACAGTGATGGAAACTTGTCATTTGATGAGCTCAAAGATGGCCTTTCAATGATTGGACACGCCATTCCTGATCCTGAGGTCGAAATGTTAATGGAGGCCGCAGATATTGATGGAAACGGCACCCTAAATTATGATGAGTTCATCACAATGAGTGTTCATCTTAGAAAGATCGAAAGTGATGAGCATCTCACAGAAGCATTCCGTTACTTTGACAAGAACCAGAGCGGATATGTTGAGTTTGATGAGTTGAGAGATGCTTTATCAGATGATGATGACGAGGAATCCGGTGACGAACAAGTGATCAAAGACATTCTAAATGATGTTGACTTGGATAAGGACGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCCTCTCGTCAGTATTCAAGAGCGATGCTGAATGCATTAAGCTTCAAGATGTTTAAAGACCCATCTGGCAATTCTGTTAAGTTGTAA 1488 0.4724 MGSCISTQGVRTRKRSRSPAYKASTPGGQGHGHGEVARRSSVTARPVNVVANPSPGSIFDKYQLGKELGRGEFGVTHRVVDLETGEAFACKKIAKTKLRTEIDVQDVRREVQIMRHLPHHPNIVAFKEAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILEVCKVCHDHGVIHRDLKPENFLFADSTENAALNTGVILYILLCGVPPFWAESEEGIAQAIIRSKVDFTRDPWPKVSDEAKHLVKCMLDPNPYTRITVQEVLDHSWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQVDVFKQMFDMMDKDSDGNLSFDELKDGLSMIGHAIPDPEVEMLMEAADIDGNGTLNYDEFITMSVHLRKIESDEHLTEAFRYFDKNQSGYVEFDELRDALSDDDDEESGDEQVIKDILNDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRAMLNALSFKMFKDPSGNSVKL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1517 495 ProSiteProfiles EF-hand calcium-binding domain profile. 320 355 IPR002048 GO:0005509
Aed9g1517 495 SMART efh_1 396 424 IPR002048 GO:0005509
Aed9g1517 495 SMART efh_1 360 388 IPR002048 GO:0005509
Aed9g1517 495 SMART efh_1 324 352 IPR002048 GO:0005509
Aed9g1517 495 SMART efh_1 434 462 IPR002048 GO:0005509
Aed9g1517 495 Pfam Protein kinase domain 62 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g1517 495 Pfam Protein kinase domain 205 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g1517 495 Gene3D Transferase(Phosphotransferase) domain 1 55 203 - -
Aed9g1517 495 CDD EFh 396 460 IPR002048 GO:0005509
Aed9g1517 495 Pfam EF-hand domain pair 324 384 IPR002048 GO:0005509
Aed9g1517 495 Pfam EF-hand domain pair 395 460 IPR002048 GO:0005509
Aed9g1517 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 205 475 - -
Aed9g1517 495 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 204 - -
Aed9g1517 495 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Aed9g1517 495 SMART serkin_6 62 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g1517 495 CDD STKc_CAMK 61 276 - -
Aed9g1517 495 Gene3D - 284 462 - -
Aed9g1517 495 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Aed9g1517 495 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Aed9g1517 495 CDD EFh 325 384 IPR002048 GO:0005509
Aed9g1517 495 ProSitePatterns EF-hand calcium-binding domain. 333 345 IPR018247 -
Aed9g1517 495 SUPERFAMILY Protein kinase-like (PK-like) 52 285 IPR011009 -
Aed9g1517 495 SUPERFAMILY EF-hand 302 461 IPR011992 -
Aed9g1517 495 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Aed9g1517 495 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 205 475 - -
Aed9g1517 495 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 40 204 - -
Aed9g1517 495 Gene3D Transferase(Phosphotransferase) domain 1 204 283 - -
Aed9g1517 495 MobiDBLite consensus disorder prediction 1 41 - -
Aed9g1517 495 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Aed9g1517 495 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Aed9g1517 495 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Aed9g1517 495 ProSiteProfiles Protein kinase domain profile. 62 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed9g1517 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1517 Aed-Chr9 18213213 18216284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1517 1 492 EF-hand Containing Proteins AT2G31500 58.564 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed9g1517 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1517 K13412 - gmx:100818929 855.129