Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1509 ATGAGCCAGTGTGTTCCCAGTTGGGATGTCGACGACAACACACCACCCCCGCGGCTCTCTCTCCGCTCCAACTCCAACTCAACCGCCCCCGATGTTCCCATGTTGGATTACGAAGTTGCTGAACTGACATGGGAAAATGGGCAACTATCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTAAAACCCGCAACAGGCGCCGCTAATAACAACAATAATAAGTACACATGGGAGAAGCCTCGGGCAGGTGGAACCTTGGAGTCCATAGTGAACCAAGCCACCAGCTTGCCCCACCACCATCACCACAGCCGGGAAAAACCAACAGCGGCGTTAAACGGTATTGGCGGCGGCGGTGGAGGGGTTTACGGGAACTTCGTCGTGCCGTGGTTCGACCCTCACGCCGTTGCAACCGCCACCGCCACCGCCACGAACACGACGACCATGGACGCATTGGTGCCGTGCTCGAACGGCCGGGAGCAGAAGAGCAAGCAGGGGATGGTGATGGAGAGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCTTGCTGCTGCGGCGGCGGTGACGGCGGGGGTAAGGGCTTGGCGGCGGCGAAGCATCAGGGGCACGAGGTGAGTGCAGGGATGGATCAGAGCGTGAGTGGGAGTGCGACGTTTGGGAGGGATAATAATAATAGCAAGCACGTGACAACACTTGACACGTGCGATAGGGAGTTTGGTACTGTGGGTTTCACTTCAACCTCCATCAACTCGCTCGACAACACCAGCTCCCCTAAGCACTGCACCAAGACCACCACCGTAGATGACCACGACTCCGTTTCCCACAGTAAACCAGTGGGCGAAGACAGAGATGAAGAGAAGAAAAAGAGAGGAAACGGAAAATCTTCGGTGTCCACAAAAAGGAGCAGAGCTGCGGCAATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGAGCGATAAAGCTTCAATGCTGGATGAGGTGATAGAGTATTTGAAGCAATTGCAAGCACAGGTGCATATGATGAACAGAATCAACATGTCATCGATGATGATGCCATTGACCATGCAACAGCAGCTTCAAATGTCGATGATGTCTCCAATGGGCATGGGATTGGGGATGGGAATGGGAATGGGTATGGGGATGGGCATGGACATGAACTCCATGAACCGCCCCAACATCCCCGGCATTCCTCCGGTCCTCCACCCTTCCGCCTTCATGCCCATGGCGGCCTCGTGGGATGCTGCCGTCGCTGCTGCCGGAGGTGGCAACCGACTTCAAGGGAATCCGGCCGCCACTGTGATGCCTGACCCTTTGTCAACATTTTTTGGATGCCAATCGCAGCCAATGACCATGGATGCCTACAGTAGAATTGCTGCCATGTATCAGCAACTTCACCAACCACCTTCCAAGAACTGA 1470 0.5463 MSQCVPSWDVDDNTPPPRLSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPATGAANNNNNKYTWEKPRAGGTLESIVNQATSLPHHHHHSREKPTAALNGIGGGGGGVYGNFVVPWFDPHAVATATATATNTTTMDALVPCSNGREQKSKQGMVMESTCMVGCSTRVGSCCCGGGDGGGKGLAAAKHQGHEVSAGMDQSVSGSATFGRDNNNSKHVTTLDTCDREFGTVGFTSTSINSLDNTSSPKHCTKTTTVDDHDSVSHSKPVGEDRDEEKKKRGNGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKSDKASMLDEVIEYLKQLQAQVHMMNRINMSSMMMPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMDMNSMNRPNIPGIPPVLHPSAFMPMAASWDAAVAAAGGGNRLQGNPAATVMPDPLSTFFGCQSQPMTMDAYSRIAAMYQQLHQPPSKN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1509 489 Gene3D - 298 363 IPR036638 GO:0046983
Aed9g1509 489 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 486 IPR031066 -
Aed9g1509 489 MobiDBLite consensus disorder prediction 17 31 - -
Aed9g1509 489 MobiDBLite consensus disorder prediction 246 262 - -
Aed9g1509 489 Pfam Helix-loop-helix DNA-binding domain 308 353 IPR011598 GO:0046983
Aed9g1509 489 MobiDBLite consensus disorder prediction 206 227 - -
Aed9g1509 489 MobiDBLite consensus disorder prediction 246 321 - -
Aed9g1509 489 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Aed9g1509 489 SMART finulus 309 358 IPR011598 GO:0046983
Aed9g1509 489 MobiDBLite consensus disorder prediction 1 31 - -
Aed9g1509 489 Coils Coil 309 329 - -
Aed9g1509 489 CDD bHLH_AtPIF_like 303 364 - -
Aed9g1509 489 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 371 IPR036638 GO:0046983
Aed9g1509 489 MobiDBLite consensus disorder prediction 306 321 - -
Aed9g1509 489 PANTHER TRANSCRIPTION FACTOR UNE10 1 486 - -
Aed9g1509 489 MobiDBLite consensus disorder prediction 207 227 - -
Aed9g1509 489 MobiDBLite consensus disorder prediction 263 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1509 Aed-Chr9 18112890 18119249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1509 1 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.000 7.95e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed9g1509 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1509 - - gmx:100787929 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1509 9 18112890 18119249 Aed2g0959 2 7562142 7566146 PCT