Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1502 ATGGATAGGCACAAGTGCAAGCTCTGCTTCAGGAGCTTCGCCAATGGGAGAGCCTTGGGGGGTCACATGCGCTCCCACATGATGAACCTCCCCATCTCAAAGCCCGAGGAACTAGCCTCCCCGCGAACCATCCAACTCAGCTTCGAAGCTGAGTCGGCTTCATCGTCTTCGTCATCAGAAAATGACGACGATGACGCAAAGGGTCTCTGCTACGGCCTCAGAGAGAACCCCAAGCGAAGCATTCGCCTCGTGGATCCCGAATTCTCGTTTGCAGCAGTGGCAGCAGCAAGAGCAGCAGACGCCGGCTCCGTGATCCTCCACGACAGAGAGAGCGAGTCCGAGTCATCGAAAAACAACCCGACTCGTAGAAGATCCAAGAGGCCGTGGAATAACAATGATGACAATTATTATAACAACAATTATAGCAATGATATTAACAATGACGTTGCCACCATCTATAACAGCGCCAGAAAGAAAGGTCTCGGATTCGAGCATGAATCCACGGTGATGTCGTCGATGAAGAGTAAGACGGAATCGTGGATGGACCATGACCCCACGAGCTCTGTCTCCGACGCAACCACCGAAGAAGACGTGGCGTTTTGTCTCATGATGCTGTCGAGGGACAAATGGAAGAGGAAAAGGGATCATCAAGATCAACCCCAATTCGTGGAGCTTGAAGATCAATACGAGGAGGATGATGATGAGGAGGAGGAAGACGAAGACGAAGACGAAGATGAAGCCTTCGAGGAGAGCGAGGAGTCTCAAGAGACGATGAAACTCTGCAGCAACAAGAACAGAGCACGAGGAAGGTACAAATGCGACACCTGCAACAAGGTGTTCCGATCCTACCAAGCATTGGGGGGCCACCGGGCGAGTCACAAGAAAACCAAAGTGAATGCGATGAAATTTGATGGTGGTGACGGCAGCAACAACAATATTAGAAACAACAGAGAACAAGAACTCGAGTACAACAACAAGAAAAAGAGTGGAGCATGTGGTAGTGTCGTCCAAAAGAAAACTCACGAGTGCCCCGTGTGTTTGAGAGTCTTTGCCTCGGGTCAAGCACTCGGGGGACACAAGAGAACCCATGTTACTGGCTCAGTGGCGATGACACTGACGACGACAATGACAGCAACAGTTTCGTCAAGTTCCGCAAAGTTGGGAAACAACAGCTTCATAGATCTCAACCTCCCTGCTCCAATCGACGAGGACGATGTTAGCCAAATCGAGAACTCTGCTATGTCCGATGCAGAATTCGTCAAAACCCATTAA 1272 0.5031 MDRHKCKLCFRSFANGRALGGHMRSHMMNLPISKPEELASPRTIQLSFEAESASSSSSSENDDDDAKGLCYGLRENPKRSIRLVDPEFSFAAVAAARAADAGSVILHDRESESESSKNNPTRRRSKRPWNNNDDNYYNNNYSNDINNDVATIYNSARKKGLGFEHESTVMSSMKSKTESWMDHDPTSSVSDATTEEDVAFCLMMLSRDKWKRKRDHQDQPQFVELEDQYEEDDDEEEEDEDEDEDEAFEESEESQETMKLCSNKNRARGRYKCDTCNKVFRSYQALGGHRASHKKTKVNAMKFDGGDGSNNNIRNNREQELEYNNKKKSGACGSVVQKKTHECPVCLRVFASGQALGGHKRTHVTGSVAMTLTTTMTATVSSSSAKLGNNSFIDLNLPAPIDEDDVSQIENSAMSDAEFVKTH 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1502 423 Coils Coil 222 242 - -
Aed9g1502 423 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 421 - -
Aed9g1502 423 SUPERFAMILY beta-beta-alpha zinc fingers 270 363 IPR036236 -
Aed9g1502 423 MobiDBLite consensus disorder prediction 106 143 - -
Aed9g1502 423 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Aed9g1502 423 Gene3D Classic Zinc Finger 268 363 - -
Aed9g1502 423 Pfam C2H2-type zinc finger 270 295 - -
Aed9g1502 423 Pfam C2H2-type zinc finger 341 363 - -
Aed9g1502 423 Pfam C2H2-type zinc finger 3 27 - -
Aed9g1502 423 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 421 IPR044303 GO:0006355
Aed9g1502 423 MobiDBLite consensus disorder prediction 212 261 - -
Aed9g1502 423 SMART c2h2final6 4 26 IPR013087 -
Aed9g1502 423 SMART c2h2final6 341 363 IPR013087 -
Aed9g1502 423 SMART c2h2final6 271 293 IPR013087 -
Aed9g1502 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 298 IPR013087 -
Aed9g1502 423 ProSitePatterns Zinc finger C2H2 type domain signature. 343 363 IPR013087 -
Aed9g1502 423 MobiDBLite consensus disorder prediction 48 70 - -
Aed9g1502 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Aed9g1502 423 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Aed9g1502 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 341 363 IPR013087 -
Aed9g1502 423 MobiDBLite consensus disorder prediction 224 252 - -
Aed9g1502 423 MobiDBLite consensus disorder prediction 106 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1502 Aed-Chr9 17977303 17978574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1502 1 409 C2H2 Transcription Factor Family AT3G60580 39.173 2.27e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed9g1502 zf-C2H2_6 7.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1502 - - gmx:100799313 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1502 9 17977303 17978574 Aed2g0953 2 7481400 7482485 PCT