Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1463 ATGGGAGTCCACGGTCTCTGGGAGCTACTCTCCCCGGTCGGCCGCCGCGTCTCCGTCGAAACCCTCGCCGGAAAAACCCTAGCCATTGCTATGCGCGACGAGAAGGGTGAAATGGTCCGCAACGCCCATTTGCTGGGCTTCTTCCGTCGCATTTGTAAGCTTCTGTTCCTCCGCACCAAGCCGGTCTTCGTCTTCGACGGCGGCACCCCGGCACTCAAGCGCCGCACCGTCATCGCACGCCGCCGCCAGCGTGAAAACGCCCAGGCCAAAGTCCGCAAAACGGCCGAGAAATTGCTGCTCAATCATTTAAAGGCACTAAGGTTGAAGGAGCTGTCTGATGATATTAAGAACCAAAGGATGAAGAATAATAGTGATACTAAGGGTCAGAAAAAATCTAATCAGAAGGACTTTGTTGGTAGTGATTTAGGAGGAAGTCATCTGAAAGAGCTAGATGAAATGTCTGCGGCTAAATATGCAGCTAAGGAGGATGGAAATTCTTCGCAGGCAACAATGTCGACAAGAAAGAAAACAGAAGGACTGGTAAAGGAAGTTGACAACCAGAAACAACATGATATCAATTATCGGGGCAAGGGTAAGGGGATTCTACTCAGTGAAGCTGGCATGGTAGGTTGTAGCTCCAAACATGACAATGTTACATCAAGGAGTGACAATCAAGACTCAATTGATGAAATGTTAGCTGCATCTATTGCTATGGAGGAAAATGAAGAGTTAGTAAATAATGCATCAACTTCTTTTGGGGCTTCCACTATTGAGGAAGAGGAAGTTGACTATGATGAAGATGAAGAGATGATACTGCCAGCTATGCATGGTGAATTTGATCCTGCTGTTCTAGCCTCATTGCCTCCATCAATGCAACTGGACCTTCTTGTTCAGATGAGAGAGCGTTTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAAATGAAGTGCAGAAAGCTGCAGCTGGAGGAGGAGTAGATGGTGTACAGACTTCACGGATTGCATCTGAAGCCAATAGAGAATATATATTCTCGTCATCTTTTACTGGTGATAAAGAAGAACTTACCTCCACCAGCTTAGAGAAAAATAAAGATGCACAACAGAATACACGGGGAGCATTTCCTTCACAGAATCTTGCAAATAGCATTGTGGCAGGAAATGATTCTAATACTTCAAGTGGATTGGTTCGCAATGAACCTAGTGAGCCTGCTGATGAAAGTATTGAGACATATCTTGATGAGAGTGGTCGCTTTCGAGTTAGTAGATTGAGAGCTATGGGGATGCGTATGACCCGTGATTTACAAAGGAATTTGGATTTGATGAAGGAGATTGAGCAGGAAAGAGCACATGTGAACACGGCTGCAAATATTGGAACAGTGAAAAATTCAGAGAATAATGGTCTGTCAGAAAGTTCTGGGATCCAACTTGTTGGTAAATCACAAGAGATGAATCTTGACTTAGTTGGAGAGAATGTGGAAGATGAACAATCAATGATTGACAGGGATACATCGATAGAGATATCTTTTGAGTATGATTGCAAGAATAAGTTTGCAAATGGTGAGGATGATCTATTTTCTAGTTTAGTAGGAGGAAATCCAGTGGCGATCTTTGGTGCTGATGATACTGCAGCAACAGAGCAACCTTCTCATTCTGATTCAGATTGTGATTGGGAAGAAGGAATTGTCGAAGGTAAAAATAACACTTTTCCTAAACATGATGAGGTAGAATTGAAGTCTTCTGTTGCAGATGATCATAATAATATTGAAAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGTGCTAACAGCACCTTACTGTCAGGAAAATTGGCATCTCAAGGGTGGCTGGAGGAGGAGTCTGATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTATAGGGGATAGGAAACTTAAATGCATGCCATCTGTAGACAAGCATTCAAATACTTGTGAGAACAAATTGGATCATGGTTTAGAACATGGTGATGATCTGTATTGTTCTGGCCCCGTGGATTTAAATGACAACACTGGGTTCCTGAATCACAAAAATAGGGAAGACAGTTCTGAACAAAATGAATTACATGAAATGGAAGACAGAGATAAAAAGCATGATTTTGTTTCTGGCAATAATGAACAAACTTTCCATTTTCATGGAAGCCAGTCAAAATCATCTGTGACATTTAATTCCAATAACACTGAGATATTGATTGACACACCTTGCAGAATGGACAGTCACTCTTGTTTTGAAGATTCAATTTCAGATACAAATGTAATGACGAAGGACCAGGTCCCTATGGTTGCAGAGCAATTATTGGATAAACATGATGGTAAAGTGTTTCTCCATAGTAACAATACATCCAAGGTTGATCCAGTTGGTGCAACTGCAGAGGAGAAAAAGAACTATATTCATGAATCTGAACCATTGAGTAATTCTACTGACACTACCAAACCTGCTATTTTCGTAGAGTCATCCTTGAAAGGATCAACCAAAGACCTTGATATCGAGCCAAAATTTCCTTCAGAGGACAGTAATGGAAATTTCTATGAGGAAAGGAATAGTAGCCTTGGCAATGATGCAGTTAACAACCCAGGAGATTTGCCTGCTCATGCAGCTGAGGTTAGCTTGGAGGAAGAAATACAAATTCTTGGTCAAGAATATATCAACCTAGAAAATGAGCAGAGGAAGCTAGAGCGGAATGCAGATTCTGTAAACAGTGAATTATTCACTGAATGCCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTTTATTTGGGGCACACAGTGTTTACAAAAATATATTTGATGACCGCAAATATGTTGAGACATACTTCATGGAGGACATGGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATACGCATGGCTCTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATCGTTAATGCTATTGAGGTTGTGAATGCATTCCCTGAGGATGATGGCCTCCTGAAATTCCGGCAATGGGTTGAGTCACCGGATCCCACCATCCTTGGAAGTTTGAATGCAAAAAGTGGATCAAATACCAGAAAGAAAGGGTCAAAAGTTGAAGAAAATATGAATTCCTCAAATTGCGATGCTAAAGAGTCTGCATCAGAGCAGAACATCCCCTATTCTCAGGAGCAAAACGAGTTGCCAGATTACATCCAAGAAATAAAGGAAACTTTCTTCAATAAGCATAGAAATGTTAGCAAGAATTGGCACTTTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTATTCTCCCCAAGTTGATAAATCAACTGAGCCGTTCACATGGGGAAAGCCAGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGGTGGACTGGCCAGAAAGCAGATGAATTGATATTACCAGTCTTAAAGGAGTATAACAAGCACGAGACTCAATTGCAGTTGGAAGCATTTTACAGTTTTAATGAAAGATTTGCAAAAATTCGTAGCAAAAGAATTAATAAAGCAGTAAAAGGAATCACTGGTAAGCAGCCTTCAAATTTGATAGATGATTCTGCGGAAGAGTTGTCCAAGAGTAGGAAGACTGGGAGAGAACCTGAGGATAGCACATTGGAGACTTCAAGGGGGATAGAAGAAAATCTTGAGGGTAGAAGGAAATCAAAAACAAAACAGTCAAGGAAAAGGAAGAATGATATTGTTGCTAAGGAGCAGTCAAAGAAAAAGAAAGTCAATGATGATCCCTCTTCAGCTCCTGGTACATCTGAGATGGAGAATTTACAGCCAAGTATGCAGACAGAAGAAGAGCAGCATGATGGTAAGGCATTGATTCATAGAAGTGGCAGAGGAAGAGGTAGAGGGACAAGGAAAGTATCAGTTCTCAATCTTATGAAACTGAAACGTCATCTGTCAATGCGATCTCGGAAACCTGTCAACTATTCTTTCAAAGACCCTGAGAATGGTGATGCTGATGATCCATTTGATGAGACCAATCAGACCGGTCCAAGAGAAGAAAATTTATCTCATATTCATGGTGTGTGTGAAGATGGTGCAGCAGATTCCAGCATGGGGAAAGAATGCAGTGCAATGAATTCTCCTCTAAAGGAGAACTTGCCTACAGACTCCCTCGATTCAGAAGGTAGGTTTTGCACAGATGCCGGTGAAACTAGTCATCCTGATACTGGCAATCAGGACTCTTCCAATGACTACCTTAAAATGGGAGGTGGATTCTGTTTTGATGATGACGAGACAGGTAACAAGCAGGATCCAATTGCCGATGTCAATACCGATACAGTGGATTATACTGCAGACTCTCCACACTGTTCTGATTATTTGGATGAAACTGATCGTGATATAAGTAGTTCAGATGTATTATTTTCTGGCACTGAAAAGCCTGAAAATGGGATACAAGGTGGAGGGGCCTCTTCTAAATCCAATATAGAGCCAAATGATTTGGTGAATGCTAGTAGTGATGATCATTCTGATATAGGGGTCTTGAAACCAGACAATGCTCCTAACAGTAGTGGAGCCCCCACTGGAGCTTTTAGAGCCATGCCGTTTTTGAGGAAAAGAAGAAAAAACTGA 4764 0.4144 MGVHGLWELLSPVGRRVSVETLAGKTLAIAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALRLKELSDDIKNQRMKNNSDTKGQKKSNQKDFVGSDLGGSHLKELDEMSAAKYAAKEDGNSSQATMSTRKKTEGLVKEVDNQKQHDINYRGKGKGILLSEAGMVGCSSKHDNVTSRSDNQDSIDEMLAASIAMEENEELVNNASTSFGASTIEEEEVDYDEDEEMILPAMHGEFDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGGVDGVQTSRIASEANREYIFSSSFTGDKEELTSTSLEKNKDAQQNTRGAFPSQNLANSIVAGNDSNTSSGLVRNEPSEPADESIETYLDESGRFRVSRLRAMGMRMTRDLQRNLDLMKEIEQERAHVNTAANIGTVKNSENNGLSESSGIQLVGKSQEMNLDLVGENVEDEQSMIDRDTSIEISFEYDCKNKFANGEDDLFSSLVGGNPVAIFGADDTAATEQPSHSDSDCDWEEGIVEGKNNTFPKHDEVELKSSVADDHNNIESEVEWEEGDCDGANSTLLSGKLASQGWLEEESDLQEAIRRSLESIGDRKLKCMPSVDKHSNTCENKLDHGLEHGDDLYCSGPVDLNDNTGFLNHKNREDSSEQNELHEMEDRDKKHDFVSGNNEQTFHFHGSQSKSSVTFNSNNTEILIDTPCRMDSHSCFEDSISDTNVMTKDQVPMVAEQLLDKHDGKVFLHSNNTSKVDPVGATAEEKKNYIHESEPLSNSTDTTKPAIFVESSLKGSTKDLDIEPKFPSEDSNGNFYEERNSSLGNDAVNNPGDLPAHAAEVSLEEEIQILGQEYINLENEQRKLERNADSVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGAHSVYKNIFDDRKYVETYFMEDMEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEDDGLLKFRQWVESPDPTILGSLNAKSGSNTRKKGSKVEENMNSSNCDAKESASEQNIPYSQEQNELPDYIQEIKETFFNKHRNVSKNWHFPSSFPSETVISAYYSPQVDKSTEPFTWGKPDHLVLRKLCWEKFGWTGQKADELILPVLKEYNKHETQLQLEAFYSFNERFAKIRSKRINKAVKGITGKQPSNLIDDSAEELSKSRKTGREPEDSTLETSRGIEENLEGRRKSKTKQSRKRKNDIVAKEQSKKKKVNDDPSSAPGTSEMENLQPSMQTEEEQHDGKALIHRSGRGRGRGTRKVSVLNLMKLKRHLSMRSRKPVNYSFKDPENGDADDPFDETNQTGPREENLSHIHGVCEDGAADSSMGKECSAMNSPLKENLPTDSLDSEGRFCTDAGETSHPDTGNQDSSNDYLKMGGGFCFDDDETGNKQDPIADVNTDTVDYTADSPHCSDYLDETDRDISSSDVLFSGTEKPENGIQGGGASSKSNIEPNDLVNASSDDHSDIGVLKPDNAPNSSGAPTGAFRAMPFLRKRRKN 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1463 1587 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1012 1221 IPR036279 -
Aed9g1463 1587 Pfam XPG I-region 946 1027 IPR006086 GO:0004518
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1288 1307 - -
Aed9g1463 1587 SMART xpgn3 1 87 IPR006085 GO:0004518
Aed9g1463 1587 SMART xpgineu 943 1012 IPR006086 GO:0004518
Aed9g1463 1587 Pfam XPG N-terminal domain 1 86 IPR006085 GO:0004518
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1474 1587 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 114 134 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1308 1324 - -
Aed9g1463 1587 ProSitePatterns XPG protein signature 1. 59 73 IPR019974 GO:0016788
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1325 1339 - -
Aed9g1463 1587 SMART HhH_4 1014 1047 IPR008918 GO:0003677|GO:0003824
Aed9g1463 1587 CDD PIN_XPG_RAD2 2 81 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1418 1432 - -
Aed9g1463 1587 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 1586 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1070 1110 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 858 889 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 872 887 - -
Aed9g1463 1587 CDD H3TH_XPG 1015 1159 - -
Aed9g1463 1587 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 1586 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1529 1550 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1247 1280 - -
Aed9g1463 1587 Coils Coil 899 933 - -
Aed9g1463 1587 Gene3D - 1012 1128 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1482 1496 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 114 143 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1236 1462 - -
Aed9g1463 1587 ProSitePatterns XPG protein signature 2. 946 960 IPR019974 GO:0016788
Aed9g1463 1587 MobiDBLite consensus disorder prediction 161 175 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 176 192 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 1088 1110 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 386 432 - -
Aed9g1463 1587 CDD PIN_XPG_RAD2 929 1013 - -
Aed9g1463 1587 Gene3D - 1 137 - -
Aed9g1463 1587 SUPERFAMILY PIN domain-like 2 1027 IPR029060 -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 386 423 - -
Aed9g1463 1587 Gene3D - 894 1011 - -
Aed9g1463 1587 MobiDBLite consensus disorder prediction 158 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1463 Aed-Chr9 16965983 16979423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1463 1 89 Core DNA Replication Machinery Family AT5G26680 33.036 1.50e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1463 K10846 - gmx:100820295 2605.09