Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1461 ATGCCTCTTTCTCCCTTTGGCCACTTTGTTCTAACCCAAAAACATGACAAGGACGAGACAGAGAGAGAGAGAGCCAAGAGAAAAAAAAAGCGTTTCACTTCACACTACACATCACATAATGTTGTATTGTATGTGGAGGAGTTTGAGATTGGGTTTGGCAAGAGCATGCTTCATGGGTCCACTTTTATGACTTTTAACCATTCTTCGGCACAATCCAATAACAATAGGCAGCACCAGGAAATTGCAGTAACCTCTGATGATGATGATGCTCTTCAGAGGCAGCTGCAGCAGCTTTTCCATCTCCATGACTCTGGTCTTGACCAGGCTTTCATTGATGCACTTCCTGTTTTCCAGTACAAGGAGATAAAGGGCTTGAAGGAGCCGTTCGACTGCGCCGTTTGTCTCTGCGAGTTTTCTGAAAAGGACAAGCTCAGGCTGCTCCCTATGTGCAGCCACGCCTTTCACATTGGTTGCATAGACACATGGCTTCTGTCAAACTCCACATGCCCTCTTTGCAGGGGAACCCTCCTCACTCCGGGCGAAAATCCGATGTTTGATTTCAATGACTTGAGGGATGACGAGGGCTGCCCCTGTTATGCAGAGAATGAATTCGCAACGAGGCAGAAGACGGTTGAAATTGAAGTTGAAAAAGAAACTGTGGTGGAGGAGGGGGTTTTCCCTGTGAGACTTGGCAAATTCAGAAGGCTTGATGTCGTGGAGGCAGTGGAGGTCGGAGGCGAGACTAGTAGCAGTAATTTGGATGCTAGGAGATGTTACTCCATGGGATCTTACCAATACGTGCTTGGCAACTCCGACCTGAGGGTAGCCTTGAGCCATGATGACCGACGACAAGCTCGCAATGCAATGCTTGCGACGAAAGGAACAGAAAACTTGGAGAGGTTTTCACTTGAGGAGGGGGATATTGAAGCAAAGAAGATTACTAGTGTGATTAAAGGTGAGAGTTATTCTGTTTCCAAAATTTGGCAATGGTCAAAGAAGGGAAAGTTTTCAGTTTCTTCTGATGTTCATATGGGCATGCCATCTTCTCTTAACACTGATTTTCCTTGGATGAGAGAAACAGGAAGGACATGA 1092 0.4625 MPLSPFGHFVLTQKHDKDETERERAKRKKKRFTSHYTSHNVVLYVEEFEIGFGKSMLHGSTFMTFNHSSAQSNNNRQHQEIAVTSDDDDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHIGCIDTWLLSNSTCPLCRGTLLTPGENPMFDFNDLRDDEGCPCYAENEFATRQKTVEIEVEKETVVEEGVFPVRLGKFRRLDVVEAVEVGGETSSSNLDARRCYSMGSYQYVLGNSDLRVALSHDDRRQARNAMLATKGTENLERFSLEEGDIEAKKITSVIKGESYSVSKIWQWSKKGKFSVSSDVHMGMPSSLNTDFPWMRETGRT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1461 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 178 IPR013083 -
Aed9g1461 363 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 67 343 - -
Aed9g1461 363 SUPERFAMILY RING/U-box 110 179 - -
Aed9g1461 363 CDD RING-H2_PA-TM-RING 130 173 - -
Aed9g1461 363 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Aed9g1461 363 Pfam Ring finger domain 130 173 IPR001841 -
Aed9g1461 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 67 343 - -
Aed9g1461 363 SMART ring_2 131 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1461 Aed-Chr9 16920900 16922818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1461 86 335 C3H Transcription Factor Family AT2G18650 41.096 3.77e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1461 - - gmx:100806337 395.201