Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1408 ATGTTGTTATCCCTAATCATTAAAATTATTTTACGTTGCCTCTATTTAAACCCTCAAACTCCAACCCCCATTATTAAGATATCAGTATCTCTCTCTCTCTCTCTCCCCTCTTCCCCTACCCCCACCTTTCTTCTCTCTAACACACACAAAACCATGGATAAAAAACAGTGCAACACGTCTCAAGATCCTGAAGTGAGAAAAGGGCCTTGGACAATGGAAGAAGACTTGATCTTGATCAACTATATTGCGAATCATGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTCAAACGCACCGGAAAGAGTTGCCGGCTCCGGTGGCTAAACTACCTCCGTCCCGATGTTAGAAGAGGGAATATTACACCGGAGGAACAGCTTTTGATCATGGAGCTTCACGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCGAAGCATCTACCTGGAAGGACTGATAATGAAATAAAGAACTATTGGAGGACAAGGATCCAGAAGAACATGAAGCAAGCTGAGAACTTTCAACAACAACAACAGAGTAATAATAATTCTGATCAGATAAATTATGATCAACAAGCTAGCACTAGCCAAGTTTCCACAACCATGGCTGAGCCAATGGAGACATATTCACCACCTTGTTACCAAGGAATGTTAGAGCCATTTTCAACTCCTCAGTTCCCCACAAATCCTGACCAATCTAGTAGTTGCTGTACCAACAATAATGACAACAATAACAGCAACTATTGGACCATGGAGGATATCTGGTCAATGCAATTACTGCATGGGGATTAA 795 0.4252 MLLSLIIKIILRCLYLNPQTPTPIIKISVSLSLSLPSSPTPTFLLSNTHKTMDKKQCNTSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKNMKQAENFQQQQQSNNNSDQINYDQQASTSQVSTTMAEPMETYSPPCYQGMLEPFSTPQFPTNPDQSSSCCTNNNDNNNSNYWTMEDIWSMQLLHGD 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1408 264 Gene3D - 124 196 - -
Aed9g1408 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 169 IPR017930 -
Aed9g1408 264 MobiDBLite consensus disorder prediction 173 197 - -
Aed9g1408 264 ProSiteProfiles Myb-like domain profile. 115 165 IPR001005 -
Aed9g1408 264 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 52 261 - -
Aed9g1408 264 CDD SANT 124 163 IPR001005 -
Aed9g1408 264 SMART sant 66 116 IPR001005 -
Aed9g1408 264 SMART sant 119 167 IPR001005 -
Aed9g1408 264 Pfam Myb-like DNA-binding domain 120 163 IPR001005 -
Aed9g1408 264 Pfam Myb-like DNA-binding domain 67 114 IPR001005 -
Aed9g1408 264 SUPERFAMILY Homeodomain-like 64 161 IPR009057 -
Aed9g1408 264 CDD SANT 69 114 IPR001005 -
Aed9g1408 264 Gene3D - 67 119 - -
Aed9g1408 264 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 52 261 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed9g1408 264 ProSiteProfiles Myb-like domain profile. 62 114 IPR001005 -
Aed9g1408 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 114 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1408 Aed-Chr9 15497079 15501330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1408 59 264 MYB Transcription Factor Family AT3G01530 57.346 1.88e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed9g1408 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1408 K09422 - gmx:778046 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1408 9 15497079 15501330 Aed9g1408 9 15497079 15501330 ECH