Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1401 ATGTCACAAGAGAACAACAACATCGCCAACTTCTACATGTACCAACAAACCAATTTCAACAACCATTTTCATCATGAGAACTATCCTCTGATTAGTAATGAGTCAAACTTTAACCATGGTGATAGTCACCACCACCACCACCCATCTGCAACTAATTTTTTCACTGATCAGGGTTCTAGTCCCTCCTCCATCCTCACCCCATTTGATTCATCATACCCCAATGAGTCCCTTAGAGGAAGCTTTGCCACCAACAACAACAACTACTATAACCCCATCATGCCGTATGCAACAAACAACACCACCCTTGATGAACCCATGCATGGCCAGCCCAACAGTACCATTTTGGACTTTTCCCAGAAAACTCCCATTCTATCTGGTGCAGGGCATGCAAGTGCAAGTGTGCTGAGGAAGAGTACAGCCAAAATTCAGGACAAGAATATGGCCAACATAATCAAAGGCCAGTGGAGTCCTGATGAGGACAGGATCCTCGTCCAATTGGTGAGGTGCTTCGGGCTGAAAAGATGGTCCCACATCGCAAAGGTGCTGAGAGGAAGGGTTGGGAAACAGTGCAAGGAGCGATGGCACAACCATCTCCGTCCTAACATTAGGAAGGAGTCATGGAACAAAGAGGAAGACAGAATTCTGATCGAATCTCACAAAGAGGTTGGGAACACATGGGCGGAGATCGCAACGAGAATGCTTGGGAGGACTGAAAATACAATCAAGAACCACTGGAACGCGACAAAGCATCGCCAAAACACGAAGCAGCAGAGGAACCAGTGCCAGAGCTTGAAGGGTGATCCCACACTTCTCGAGAGCTACATAAGGCAAGTCACCGTGGAAGAAGAGGCGGCCAAAAAAAAGGTGGAGCTGCTGCTGAAGAATTCCATGAGCAACATGACCCTCAAGGGAGATTTATTATTGAATGGAATGGTTGGAGGATTCATGATAGAATTGTTCATCCTCCTCATCAAGCAAGCATGTGCCTCTATTGCACTAAAGACAAATGACAAGAAGATCCAAAAGAACTAG 1032 0.4622 MSQENNNIANFYMYQQTNFNNHFHHENYPLISNESNFNHGDSHHHHHPSATNFFTDQGSSPSSILTPFDSSYPNESLRGSFATNNNNYYNPIMPYATNNTTLDEPMHGQPNSTILDFSQKTPILSGAGHASASVLRKSTAKIQDKNMANIIKGQWSPDEDRILVQLVRCFGLKRWSHIAKVLRGRVGKQCKERWHNHLRPNIRKESWNKEEDRILIESHKEVGNTWAEIATRMLGRTENTIKNHWNATKHRQNTKQQRNQCQSLKGDPTLLESYIRQVTVEEEAAKKKVELLLKNSMSNMTLKGDLLLNGMVGGFMIELFILLIKQACASIALKTNDKKIQKN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1401 343 Gene3D - 149 204 - -
Aed9g1401 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 202 IPR017930 -
Aed9g1401 343 SUPERFAMILY Homeodomain-like 149 245 IPR009057 -
Aed9g1401 343 CDD SANT 206 249 IPR001005 -
Aed9g1401 343 PANTHER MYB PROTEIN-RELATED 65 280 - -
Aed9g1401 343 CDD SANT 155 198 IPR001005 -
Aed9g1401 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 253 IPR017930 -
Aed9g1401 343 PANTHER MYB DOMAIN PROTEIN 100-RELATED 65 280 - -
Aed9g1401 343 Gene3D - 205 268 - -
Aed9g1401 343 SMART sant 151 200 IPR001005 -
Aed9g1401 343 SMART sant 203 251 IPR001005 -
Aed9g1401 343 ProSiteProfiles Myb-like domain profile. 147 198 IPR001005 -
Aed9g1401 343 ProSiteProfiles Myb-like domain profile. 199 249 IPR001005 -
Aed9g1401 343 MobiDBLite consensus disorder prediction 34 58 - -
Aed9g1401 343 Pfam Myb-like DNA-binding domain 155 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1401 Aed-Chr9 15306698 15330569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1401 7 280 MYB Transcription Factor Family AT4G18770 39.437 1.14e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed9g1401 Myb_DNA-bind_6 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1401 K09422 - gmx:100805329 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1401 9 15306698 15330569 Aed9g1401 9 15306698 15330569 ECH