Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1379 ATGGACTCACCGCCCAGTAATCACCACCACACCGTCGACGGAGACGCCAACGACATCGCTAGACCCTTTTCCCACCGCGACGACGACGACGACGATGACAAGCCCCAACCTCTCACCGGCGACGGCGCCAGTCCCGGAAAGATATTCATAGGGGGTTTAGCGAGAGAAACGACGATTGCGCAATTCATCAAGCACTTCGGTAAATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGTTTCGGCTTCATCACTTATGCCGATCCCTCTGTGGTTGATACAGTTATTGAGGACACTCACATCATCAATGGCAAGCAGGTGGAGATTAAGCGAACAATACCGAGAGGGGCTGTTGGCTCAAACTCAAAGGACTTTCGAACGAAGAAGATTTTTGTGGGTGGAATTCCTTCTACTGTGACTGAAGATGAATTTAGGGACTTCTTTACACGCTATGGAGAAGTGGAAATCAAAAAGGCAGAACCAAAGAAGCCAAATCCACCAGCTCCGTCATCCAAGCGCTATAATGACTCCCGATCTTCATATGGTGGTGGATATGGAGATGGTTATGACGGATTTGGTGCTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGCAGGGGAAATGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGGTATGGAGGATATGCCGGTGCCATGGGGCCATATAGAGGTGATCCTTCACTTGGGTATGCTGGTCGATATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGGACCTAGTGAGGGTTATGGGGCATATGGTGGTGGTGGTGGTGGTTCCTCTGGTAGTGCCTATGGAAGCAGCTATGATGCCAGTTTAGGGGGTGGATATGGGGGACCTGCTGCCAGCTCCTTTTATGGGACTAGAGGGGGATACGGTGGTGCAGGAACCGGTCGATATCATCCTTATGGAAGATAG 990 0.5111 MDSPPSNHHHTVDGDANDIARPFSHRDDDDDDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDTVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVEIKKAEPKKPNPPAPSSKRYNDSRSSYGGGYGDGYDGFGANFGMGGYRSGGAYGGRGNAYGGFGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGGFGRGYDLGGYGGPSEGYGAYGGGGGGSSGSAYGSSYDASLGGGYGGPAASSFYGTRGGYGGAGTGRYHPYGR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1379 329 Gene3D - 46 125 IPR012677 -
Aed9g1379 329 MobiDBLite consensus disorder prediction 1 47 - -
Aed9g1379 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 115 IPR000504 GO:0003723
Aed9g1379 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 163 IPR000504 GO:0003723
Aed9g1379 329 MobiDBLite consensus disorder prediction 1 37 - -
Aed9g1379 329 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 6 162 - -
Aed9g1379 329 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 161 329 - -
Aed9g1379 329 SMART rrm1_1 47 118 IPR000504 GO:0003723
Aed9g1379 329 SUPERFAMILY RNA-binding domain, RBD 46 166 IPR035979 GO:0003676
Aed9g1379 329 MobiDBLite consensus disorder prediction 166 187 - -
Aed9g1379 329 Gene3D - 128 194 IPR012677 -
Aed9g1379 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 162 IPR000504 GO:0003723
Aed9g1379 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 122 IPR000504 GO:0003723
Aed9g1379 329 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 6 162 - -
Aed9g1379 329 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 161 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1379 Aed-Chr9 14245507 14251084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1379 42 162 Eukaryotic Initiation Factors Gene Family AT1G71770 23.913 1.13e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1379 K12741 K14314 gmx:100813165 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1379 9 14245507 14251084 Aed9g1379 9 14245507 14251084 ECH
Aed9g1379 9 14245507 14251084 Aed3g2656 3 28344455 28350833 PCT