Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1307 ATGTATGCCATCGGTGGAAGCGCGAGTCCTACCATCAACAGCCAGGGAAACCGGTTCGTTGCGCCGGACAACGCCTTTAGCAAGGAGGTAACCAAGCGCGAGGACGCTCCGGAGAACGAATGGATGCACTGGAACTGGAGGTCGGAGGGGGACTTGTTCTTGAATGGAGCATTCTTCATTCGATCCGGTGCGGGCGCTTCTTCCACCTACGCTAGGGCATCGAGTGTTAGTACGCGACCGTCTTCGCTGGTGGGATCCATGACGCTCAATGCTGGTGCACTCAACTGTAGGATGGGAACTCATTGTTGA 309 0.5599 MYAIGGSASPTINSQGNRFVAPDNAFSKEVTKREDAPENEWMHWNWRSEGDLFLNGAFFIRSGAGASSTYARASSVSTRPSSLVGSMTLNAGALNCRMGTHC 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1307 102 SUPERFAMILY Pectin lyase-like 1 102 IPR011050 -
Aed9g1307 102 PANTHER PECTATE LYASE 1 99 - -
Aed9g1307 102 PRINTS Pollen allergen Amb family signature 2 21 IPR018082 -
Aed9g1307 102 PRINTS Pollen allergen Amb family signature 73 96 IPR018082 -
Aed9g1307 102 PRINTS Pollen allergen Amb family signature 44 68 IPR018082 -
Aed9g1307 102 PANTHER PECTATE LYASE 18-RELATED 1 99 IPR045032 GO:0030570
Aed9g1307 102 Gene3D - 1 95 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1307 Aed-Chr9 11178701 11179009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1307 1 102 Polysaccharide Lyase AT3G07010 74.510 1.94e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1307 K01728 - jre:108980906 174.481