Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g1306 ATGACTGACCTATGCTTCCTTCTTTTAGCTCTCTATCCTCTGATAATTCCCAACTTCGTTTCCTCCTCACCAGTGCATGATCCTGTACTAGTTGTACAAGATGTACACAGGAGCATCAATGCCTCTAGAAGGAACCTAGGTTATTTCCCATGTGGAACTGGCAATCCCATCGATGATTGTTGGCGATATGATCGAAATTGGGAAAGAAATCGACAAACATTAGCAGATTGCGCCATTGGGTTTGGGAGAGATGCCTTGGGAGGAAGAAACGGTCGAATCTACGTTGTCACTGACTCTAGTGATGATGTAGATGACTCAATAAATCCAAGACTAGGAACGTTGAGACATGCTGTCATCCAGGACTCTCCCCTGTGGATAATTTTCAAAAGGGATATGGTGATTACCTTGAAGCAAGAGCTCATGATGAGCTCCTACAAGACCCTCGACGGAAGGGGTGCGAGCATCCACATCGTAGGTGGTGGATGCATCGCCATACGTCACATGAGTAACATCATCATCCATGGGGTTCACATACATGATTGCAAGCCCATGAAGGGGAATGATGATGATGATGATGATCATGGTCATCATGGGGATGGGGTTTCGATTTTTGATTCGAGGCATGTGTGGATTGACCATTGCTCGTTGTCTAATTGCCATGATGGGCTCATTGATGTTGTTCATGGATCCACGGCTGTTACTATCTCGAATAATCACATGGCACATCATGATAAGTTCATGCTCTTTGGGCATAGTGATTATTACGTACGAGACAAGGACATGCAGGTTACGGTGGCCTTCAACCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTAA 843 0.452 MTDLCFLLLALYPLIIPNFVSSSPVHDPVLVVQDVHRSINASRRNLGYFPCGTGNPIDDCWRYDRNWERNRQTLADCAIGFGRDALGGRNGRIYVVTDSSDDVDDSINPRLGTLRHAVIQDSPLWIIFKRDMVITLKQELMMSSYKTLDGRGASIHIVGGGCIAIRHMSNIIIHGVHIHDCKPMKGNDDDDDDHGHHGDGVSIFDSRHVWIDHCSLSNCHDGLIDVVHGSTAVTISNNHMAHHDKFMLFGHSDYYVRDKDMQVTVAFNHFGEGLVQRMPR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g1306 280 Pfam Pectate lyase 139 279 IPR002022 -
Aed9g1306 280 PANTHER PECTATE LYASE 18-RELATED 14 280 IPR045032 GO:0030570
Aed9g1306 280 SMART amb_all 131 280 IPR002022 -
Aed9g1306 280 SUPERFAMILY Pectin lyase-like 39 280 IPR011050 -
Aed9g1306 280 Gene3D - 54 280 IPR012334 -
Aed9g1306 280 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Aed9g1306 280 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Aed9g1306 280 PRINTS Pollen allergen Amb family signature 277 280 IPR018082 -
Aed9g1306 280 PANTHER PECTATE LYASE 11-RELATED 14 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g1306 Aed-Chr9 11170008 11171339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g1306 4 280 Polysaccharide Lyase AT5G63180 64.336 9.88e-132 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g1306 K01728 - gmx:100794814 428.328